Detailed information on CNT30676742


BLAST search results

BLAST vs Swiss-Prot:
sp|O65107|PSAN_MAIZE, E-value = 7e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697529Setaria viridisOryza sativa14.9626.2193.52108forward
CNT30523702Setaria viridisSetaria italica34.0749.299.19246forward
CNT30137831Setaria viridisLolium perenne12.8821.5893.5593forward
CNT305897Setaria viridisZea mays24.9338.7195180forward
CNT30349482Setaria viridisEragrostis tef9.729.5492.8670forward
CNT30367427Setaria viridisSorghum bicolor17.8732.5894.57129forward
CNT30582696Setaria viridisEchinochloa crusgalli24.7934.2995.53179forward
CNT30551854Setaria viridisOryza brachyantha25.0725.6790.06181forward

Expression of CNT30676742

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTFSLTWCGMAVAVRAWLAARRVGRRWFCF*

>peptide 2 (55 aa)
MTVNYTHPNFPAVWASRHTASSPSSSRPITTSRKRWSRTCTSPCPRTRSRGPGSR*

Sequence

>CNT30676742
CTCATGTACCGGTTTGTCGTAGAGTTTCATAATAGACTGAAGCTTCCTTAATCTTCTCATCCTCGTTTTGTTTGGAAGAAGTCATTGAATAAAGCCGATG
AAAAGAGTCGTCAACCAAGCAAGAAAGGATGCTACAGTTTCACTCTCCCCGGTGCAAGAGGTTCGTGCATGATCAGATAAATGAGATGATACAAATATAA
TGACGGTAAATTACACACATCCAAATTTCCCTGCAGTTTGGGCATCACGTCACACCGCAAGCAGTCCCTCCAGTTCGCGGCCAATCACCACTTCCAGAAA
ACGTTGGAGCCGCACTTGTACTTCTCCTTGCCCTCGCACTCGATCTCGAGGTCCTGGCAGCCGGTGAAGTTGTAGGGGAACTGGCAGCTGCCGAACTCCA
CGGTGTAGGCGCGCGCGAAGTTGGCGCCGCTGGTGGCAAGCCTCTTCTTGTCGTTCAGCTCCTGACCATCGTAGCACAAACCACAAATGTAATCTTGTCA
GCTTTCACTTTCAGACAAATAAATAACAAAGCAACAATTCTGAAATAAATGAAGAAACTGATGACGACCTTGTTGGCCTTGCTCTTCTCGAGCTCACGCC
GGCCATGACCTTCTCCTTGACTTGGTGTGGTATGGCTGTGGCTGTGCGTGCTTGGTTGGCAGCAAGGAGAGTGGGTCGGCGATGGTTTTGTTTTTGATCG
TGGGTGGCAGACGCTTGTGGAG