Detailed information on CNT30676686


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43193|NLTP1_SORBI, E-value = 5e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524155Setaria viridisSetaria italica10084.7799.74384forward
CNT30555885Setaria viridisOryza glaberrima44.5315.7287.13171forward
CNT30247616Setaria viridisAvena sativa45.5717.9784175forward
CNT30471439Setaria viridisSaccharum spontaneum54.9579.3291.94211forward
CNT30137433Setaria viridisLolium perenne45.5727.2282.86175forward
CNT30367388Setaria viridisSorghum bicolor54.6957.8585.24210forward
CNT30578263Setaria viridisOryza barthii44.5316.887.13171forward

Expression of CNT30676686

Peptides detected in this lncRNA

>peptide 1 (97 aa)
GGADGVGDADAALGWDAGGVAGVEAADPPGGVLEAVACGAPVGGGRGGGVESPDAAAAGVGGFGALAAGVREALADGGVDLAAAASSTTATTASTTT*

>peptide 2 (62 aa)
MLTPHLDGMLAALPALRPLIPLAAFLRQLHAARLSAVVVAAELSLLTPLQQASEGLEPWPRA*

Sequence

>CNT30676686
TGGAGGTGCTGATGGAGTAGGGGATGCTGACGCCGCACTTGGATGGGATGCTGGCGGCGTTGCCGGCGTTGAGGCCGCTGATCCCCCTGGCGGCGTTCTT
GAGGCAGTTGCATGCGGCGCGCCTGTCGGCGGTGGTCGTGGCGGCGGAGTTGAGTCTCCTGACGCCGCTGCAGCAGGCGTCGGAGGGTTTGGAGCCCTGG
CCGCGGGCGTAAGGGAGGCACTGGCCGATGGCGGAGTTGACCTGGCCGCCGCGGCGAGCAGCACCACGGCCACGACGGCGAGCACCACCACCTGAGCGCG
AGCCATGATGCTGTCTTGCTGTTGTGTTAGCTGCTAGCTGCGCTCGATGGATCGGATGTGGTTTAGCTTGCTGCTTGGGAAGAA