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Detailed information on CNT30676538


BLAST search results

BLAST vs Swiss-Prot:
sp|P31093|PSAN_HORVU, E-value = 8e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30338470Setaria viridisEragrostis tef21.3716.5989.91109forward

Expression of CNT30676538

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MIPALADPVVALTPAMTFSLTWCGMAVAVRAWLAARRVGRRWFCF*

>peptide 2 (54 aa)
MTVNYTHPNFPAVWASRHTASSPSSSRPITTSRKRWSRTCTSPCPRTRSRGTRR*

Sequence

>CNT30676538
CGGTTTGTCGTAGAGTTTCATAATAGACTGAAGCTTCCTTAATCTTCTCATCCTCGTTTTGTTTGGAAGAAGTCATTGAATAAAGCCGATGAAAAGAGTC
GTCAACCAAGCAAGAAAGGATGCTACAGTTTCACTCTCCCCGGTGCAAGAGGTTCGTGCATGATCAGATAAATGAGATGATACAAATATAATGACGGTAA
ATTACACACATCCAAATTTCCCTGCAGTTTGGGCATCACGTCACACCGCAAGCAGTCCCTCCAGTTCGCGGCCAATCACCACTTCCAGAAAACGTTGGAG
CCGCACTTGTACTTCTCCTTGCCCTCGCACTCGATCTCGAGGTACTCGTCGATGATCCCGGCCTTGGCCGACCCGGTGGTGGCGCTCACGCCGGCCATGA
CCTTCTCCTTGACTTGGTGTGGTATGGCTGTGGCTGTGCGTGCTTGGTTGGCAGCAAGGAGAGTGGGTCGGCGATGGTTTTGTTTTTGATCGTGGGTGGC
AGACGCTTGT