Detailed information on CNT30676413


BLAST search results

BLAST vs Swiss-Prot:
sp|B3A0N2|NLTP_LYCBA, E-value = 2e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697724Setaria viridisOryza sativa36.8618.4889.71136forward
CNT30371496Setaria viridisOryza glumipatula36.5945.389.63135forward
CNT30151138Setaria viridisBrachypodium distachyon36.0444.9384.21133forward
CNT30103942Setaria viridisOryza rufipogon35.544.7189.31131forward
CNT30117882Setaria viridisOryza nivara36.3130.889.55134forward

Expression of CNT30676413

Peptides detected in this lncRNA

>peptide 1 (60 aa)
QNVAGMTTTQGSEDSSLTHEGRRTHYQQAYNSVHDGGERSYSSVNSYMYRYVATVEVLME*

>peptide 2 (33 aa)
MKDDAHTTSKRIIAYTTAERDLIHQSTHTCIGM*

>peptide 3 (49 aa)
MLTPHLDGMLAALPALRPLIPLAAFLRQLHAARLSAVVLLAALDGSDVV*

Sequence

>CNT30676413
ACAAAACGTAGCAGGGATGACGACGACACAAGGATCGGAGGACTCCTCTCTCACACATGAAGGACGACGCACACACTACCAGCAAGCGTATAATAGCGTA
CACGACGGCGGAGAGAGATCTTATTCATCAGTCAACTCATACATGTATAGGTATGTAGCGACGGTGGAGGTGCTGATGGAGTAGGGGATGCTGACGCCGC
ACTTGGATGGGATGCTGGCGGCGTTGCCGGCGTTGAGGCCGCTGATCCCCCTGGCGGCGTTCTTGAGGCAGTTGCATGCGGCGCGCCTGTCGGCGGTGGT
CCTGCTAGCTGCGCTCGATGGATCGGATGTGGTTTAGCTTGCTGCTTGGGAAGAAATGTGCTTTGCTTT