CANTATAdb - search

Detailed information on CNT30676366

BLAST search results

BLAST vs Swiss-Prot:
sp|Q39994|CALX_HELTU, E-value = 4e-40

BLAST vs NONCODE:
NONZMAT001268, E-value = 4e-96

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30517641	Setaria viridis	Juglans regia	47.31	34.39	84.86	185	forward
CNT30378008	Setaria viridis	Arabidopsis thaliana	27.11	11.7	89.62	106	forward
CNT30278532	Setaria viridis	Chenopodium quinoa	57.03	20.29	85.2	223	forward
CNT30629341	Setaria viridis	Vigna unguiculata	41.94	15.02	82.32	164	forward
CNT30709122	Setaria viridis	Glycine max	35.55	39.49	82.01	139	forward
CNT30395817	Setaria viridis	Triticum turgidum	55.75	28.2	90.37	218	forward
CNT30561418	Setaria viridis	Actinidia chinensis	32.74	12.7	82.81	128	forward
CNT30686114	Setaria viridis	Triticum urartu	55.75	36.45	90.83	218	forward
CNT30349705	Setaria viridis	Eragrostis tef	56.27	31.38	91.36	220	forward
CNT30120416	Setaria viridis	Citrus clementina	28.9	54.07	86.73	113	forward
CNT3038556	Setaria viridis	Cucumis melo	28.13	13.92	89.09	110	forward
CNT30149228	Setaria viridis	Brachypodium distachyon	33.5	27.58	87.79	131	forward
CNT30585446	Setaria viridis	Echinochloa crusgalli	39.9	51.66	95.51	156	forward
CNT30116414	Setaria viridis	Oryza nivara	35.04	48.93	89.78	137	forward
CNT30725707	Setaria viridis	Lupinus angustifolius	29.67	21.05	86.21	116	forward

Expression of CNT30676366

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKCTLLVDPHLSGPNIIVYGVSLSNSLASHPAS*

>peptide 2 (78 aa)
SSSSQSSGLAASGSSISSGSSSSHPSGLVASSSSISIGASSSQSSGFTASGSGILALSSQSSGFLSSGSGMVLGGNLR*

>peptide 3 (54 aa)
PHHPSPQAWLPLDHQFPQAHHPAIPQAWWLPHPQFPLEHPHPSHQASLHLDQEF*

>peptide 4 (99 aa)
LIIPVLRLGCLWIINFLRLIIQPSLRLGGFLILNFHWSILIPVIRLHCIWIRNFSSLIPVLWLLVIRVRNGLGWELEVMLDILSSLGVLVLKDEMHLVG*

Sequence

>CNT30676366
TCCTCATCATCCCAGTCCTCAGGCTTGGCTGCCTCTGGATCATCAATTTCCTCAGGCTCATCATCCAGCCATCCCTCAGGCTTGGTGGCTTCCTCATCCT
CAATTTCCATTGGAGCATCCTCATCCCAGTCATCAGGCTTCACTGCATCTGGATCAGGAATTTTAGCTCTCTCATCCCAGTCCTCTGGCTTCTTGTCATC
AGGGTCAGGAATGGTCTTGGGTGGGAACTTGAGGTGATGCTCGACATACTTTCCAGTCTTGGGGTTCTTGTGCTTAAGGATGAAATGCACCTTGTTGGTT
GACCCACACTTGTCTGGGCCAAACATAATAGTGTATGGAGTCTCATTATCAAACTCCTTGGCATCCCATCCAGCATCCTGAGGGCGGATGT