Detailed information on CNT30676354


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 2e-53

BLAST vs NONCODE:
NONZMAT001268, E-value = 1e-121

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517752Setaria viridisJuglans regia50.659.380.78255forward
CNT30377662Setaria viridisArabidopsis thaliana41.8723.3481.52211forward
CNT30281153Setaria viridisChenopodium quinoa54.174282.42273forward
CNT30728459Setaria viridisCorchorus capsularis20.8316.9486.67105forward
CNT30164689Setaria viridisPistacia vera48.6144.5581.63245forward
CNT30190468Setaria viridisSecale cereale58.1330.388.4293forward
CNT30238817Setaria viridisBrassica oleracea43.6541.2883.64220forward
CNT30144554Setaria viridisMedicago truncatula42.6625.1282.33215forward
CNT30264134Setaria viridisBrassica rapa40.8723.7682.52206forward
CNT30365925Setaria viridisSorghum bicolor58.133396.25293forward
CNT30120413Setaria viridisCitrus clementina43.2526.9580.28218forward
CNT30101562Setaria viridisOryza rufipogon50.7929.6392.58256forward
CNT3048947Setaria viridisCucumis sativus28.7710.2582.76145forward

Expression of CNT30676354

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTLLLYTQNIKRRILKKKQTGSLPSSFPPRRSKFSPHCLASR*

>peptide 2 (36 aa)
PENNHLCLIQSDYKSQAQHTNDRQKLTSTAREGFLV*

>peptide 3 (33 aa)
MKCTLLVDPHLSGPNIIVYGVSLSNSLASHPAS*

>peptide 4 (36 aa)
MRELVIWDRRWELEVMLDILSSLGVLVLKDEMHLVG*

Sequence

>CNT30676354
TACCAGAAAACAATCACCTCTGTCTGATTCAAAGTGATTATAAAAGTCAGGCACAGCACACAAACGACCGACAGAAACTAACTTCTACTGCTCGTGAAGG
GTTCCTGGTCTAACCATGTAAACAACAAATCATCAGCTGCGAAGCAGCAGAGGTGACATATGACACTCCTATTATACACTCAAAATATTAAGAGGCGAAT
TCTCAAAAAGAAGCAGACAGGAAGTTTGCCTTCTTCTTTTCCTCCCCGTCGATCAAAATTCTCACCTCATTGTCTGGCTTCAAGATAGCCGTGTAGACAT
GAGAGAGCTTGTCATATGGGACAGAAGGTGGGAACTTGAGGTGATGCTCGACATACTTTCCAGTCTTGGGGTTCTTGTGCTTAAGGATGAAATGCACCTT
GTTGGTTGACCCACACTTGTCTGGGCCAAACATAATAGTGTATGGAGTCTCATTATCAAACTCCTTGGCATCCCATCCAGCATCCTGAGGGCGGATGTAC
TTAA