« Back to Setaria viridis search


Detailed information on CNT30676304


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30349480Setaria viridisEragrostis tef13.5527.7691.1868forward

Expression of CNT30676304

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MIPALADPAACGTAAAGLSPTTLDELTPAMTFSLTWCGMAVAVRAWLAARRVGRRWFCF*

>peptide 2 (43 aa)
MTVNYTHPNFPAVWASRHTASSPSSSRPITTSRKRWSRTCTRR*

Sequence

>CNT30676304
CGGTTTGTCGTAGAGTTTCATAATAGACTGAAGCTTCCTTAATCTTCTCATCCTCGTTTTGTTTGGAAGAAGTCATTGAATAAAGCCGATGAAAAGAGTC
GTCAACCAAGCAAGAAAGGATGCTACAGTTTCACTCTCCCCGGTGCAAGAGGTTCGTGCATGATCAGATAAATGAGATGATACAAATATAATGACGGTAA
ATTACACACATCCAAATTTCCCTGCAGTTTGGGCATCACGTCACACCGCAAGCAGTCCCTCCAGTTCGCGGCCAATCACCACTTCCAGAAAACGTTGGAG
CCGCACTTGTACTCGTCGATGATCCCGGCCTTGGCCGACCCGGCGGCCTGCGGCACCGCCGCGGCGGGCTTGAGCCCGACGACGCTGGATGAGCTCACGC
CGGCCATGACCTTCTCCTTGACTTGGTGTGGTATGGCTGTGGCTGTGCGTGCTTGGTTGGCAGCAAGGAGAGTGGGTCGGCGATGGTTTTGTTTTTGATC
GT