Detailed information on CNT30676294


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43875|NLT42_HORVU, E-value = 5e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30444120Setaria viridisAegilops tauschii24.1214.0388.7162forward
CNT30136219Setaria viridisLolium perenne27.6311.7992.9671forward
CNT30367564Setaria viridisSorghum bicolor32.314.4393.9883forward
CNT30578036Setaria viridisOryza barthii44.3638.2690.35114forward
CNT30582166Setaria viridisEchinochloa crusgalli29.1811.9697.3375forward

Expression of CNT30676294

Peptides detected in this lncRNA

>peptide 1 (44 aa)
HEGRRTHYQQAYNSVHDGGERSYSSVNSYMYRYVATQSVEVLME*

>peptide 2 (33 aa)
MKDDAHTTSKRIIAYTTAERDLIHQSTHTCIGM*

>peptide 3 (38 aa)
MLTPHLDGMLAALPALRPLIPLAAFLRHLLLGKKCALLC

Sequence

>CNT30676294
ACATGAAGGACGACGCACACACTACCAGCAAGCGTATAATAGCGTACACGACGGCGGAGAGAGATCTTATTCATCAGTCAACTCATACATGTATAGGTAT
GTAGCGACGCAGTCGGTGGAGGTGCTGATGGAGTAGGGGATGCTGACGCCGCACTTGGATGGGATGCTGGCGGCGTTGCCGGCGTTGAGGCCGCTGATCC
CCCTGGCGGCGTTCTTGAGGCACTTGCTGCTTGGGAAGAAATGTGCTTTGCTTTGCT