Detailed information on CNT30676277


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 2e-38

BLAST vs NONCODE:
NONBNAT005965, E-value = 3e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693219Setaria viridisOryza sativa76.2147.9491.86221forward
CNT30523741Setaria viridisSetaria italica10073.23100290forward
CNT30553477Setaria viridisOryza glaberrima76.2147.5389.59221forward
CNT30576255Setaria viridisOryza barthii76.2113.8191.86221forward
CNT30498154Setaria viridisDigitaria exilis77.5944.3894.67225forward

Expression of CNT30676277

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPSLSWILAFTLSIVSEDSTSKVMVLPVRVF

>peptide 2 (79 aa)
MHYSNSSQTTTQAENEVQGGLLLDVVISKGAAVLKLLASEDKALLVRRDALLVLDLGLHIVDRVRGLDLQGDGLASQGLH

>peptide 3 (42 aa)
TYLANPKLQFNHDTMTPCTTATAHRPPRRRRTRCRVDSFWML*

Sequence

>CNT30676277
ACTTATTTAGCTAACCCGAAACTCCAATTTAACCATGACACGATGACACCATGCACTACAGCAACAGCTCACAGACCACCACGCAGGCGGAGAACGAGGT
GCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGGTCCGGAGGGATGCC
CTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCAC