Detailed information on CNT30675918


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 4e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224179Setaria viridisHordeum vulgare38.5928.4491.67120forward
CNT30205828Setaria viridisHelianthus annuus36.9829.8784.35115forward

Expression of CNT30675918

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MNSMTNSVDDDAKYSDLPASYHCGALMSPALVSTSGISIPAQRVETIVARQA

>peptide 2 (32 aa)
PLASSFSLASSVGAKLSGLKTLPGYPHSWGPG*

>peptide 3 (47 aa)
VGELLLLGLERGREVERVEDAAGVSALMGSWLTLPGFLMSCHRRIST*

Sequence

>CNT30675918
CCGTTGGCGAGCTCCTTCTCCTTGGCCTCGAGCGTGGGCGCGAAGTTGAGCGGGTTGAAGACGCTGCCGGGGTATCCGCACTCATGGGGTCCTGGTTGAC
GCTGCCGGGGTTCTTGATGTCCTGCCACCGCCGGATCTCGACGTAGTGGAAGAGGATGAACTCGATGACGAACAGCGTGGACGACGACGCGAAGTACTCC
GACTTGCCGGCGTCGTACCACTGCGGCGCGTTGATGAGCCCGGCCTTGGTCAGCACCTCCGGGATCAGCATCCCGGCCCAGCGGGTCGAAACCATTGTCG
CCCGGCAGGCT