Detailed information on CNT30675852


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 7e-40

BLAST vs NONCODE:
NONBNAT003938, E-value = 3e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712364Setaria viridisGlycine max37.0847.3682.45188forward
CNT30613762Setaria viridisArabis alpina32.9441.7585.63167forward
CNT30366950Setaria viridisSorghum bicolor71.9942.6491.78365forward

Expression of CNT30675852

Peptides detected in this lncRNA

>peptide 1 (97 aa)
RSSITLAPRMQMQARKSSTPQNKQKTQGSGITRITKLSTRENHQAALSRPPPSCSHRHRPQEGACHCQPPGFRPRRCSGLALAFGGCGCQRCWGHRG*

>peptide 2 (48 aa)
MSLSASGVSSSSMLRPSFSIRWMRLPKVLGSSRLKPEVSRVTVKDPPA*

Sequence

>CNT30675852
ACGCAGTTCGATAACCCTAGCACCACGCATGCAGATGCAGGCTAGGAAAAGTAGCACCCCACAAAATAAACAAAAAACTCAAGGTTCAGGAATAACCAGA
ATAACTAAGCTCTCGACTCGAGAAAACCACCAAGCAGCGCTTAGTCGACCTCCTCCATCTTGCTCTCACCGGCATCGTCCTCAAGAGGGGGCATGTCACT
GTCAGCCTCCGGGGTTTCGTCCTCGTCGATGCTCAGGCCTAGCTTTAGCATTCGGTGGATGCGGCTGCCAAAGGTGTTGGGGTCATCGAGGCTGAAGCCA
GAGGTATCACGTGTGACGGTGAAGGATCCACCAGCCTGAGACTCCCACACGTACTGCTCATCATCGTTGTGCTTGGTGGTCACAACAACTCTCTCAGCAA
CAAGGTAGGCAGAGTAGAAACCAACTCCAAACTGACCGATCATAGACACATCAGCACCAGCAGCCAGAGCCTCCATGAACTCCTTTGTGCCTGACCGTGC
AATGGTA