Detailed information on CNT30675823


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43216|H2B5_WHEAT, E-value = 2e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702570Setaria viridisQuercus lobata29.952689.23130forward
CNT30379403Setaria viridisManihot esculenta26.7320.6483.62116forward
CNT30196132Setaria viridisPisum sativum29.492785.94128forward
CNT30163372Setaria viridisPistacia vera26.7320.1482.76116forward
CNT3015998Setaria viridisZea mays53.4660.192.67232forward
CNT30606042Setaria viridisGossypium raimondii41.9459.6784.07182forward
CNT30570929Setaria viridisVitis vinifera29.4919.0885.16128forward
CNT3024639Setaria viridisPopulus trichocarpa30.1831.880.92131forward
CNT3065708Setaria viridisSelaginella moellendorffii29.7237.1886.82129forward

Expression of CNT30675823

Peptides detected in this lncRNA

>peptide 1 (61 aa)
RNCIGELLRNNTPDSRKHTRTLLTLIRRPSTGDTGKQGNYRRCNNHPTTGVNQPREDNRIA*

>peptide 2 (49 aa)
MVGFLLYRASLAASAASFSKMSLMKEFMMDMALEEMPMSGWTCLSTLKM*

Sequence

>CNT30675823
CAGAAATTGCATTGGTGAACTACTCAGGAACAATACACCAGATTCACGAAAGCACACGCGCACACTTCTTACATTAATCAGGCGACCAAGTACTGGAGAT
ACAGGAAAGCAGGGCAACTACCGCCGCTGCAACAACCATCCTACTACAGGGGTGAACCAACCACGAGAAGACAACCGCATCGCCTAAGAGCTGGTGAACT
TGGTGATGGTGGGCTTCTTGTTGTACCGCGCGAGCTTGGCCGCCTCCGCCGCCAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGC
CTTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACGCTCTTCTTCGCCTTCTTCTTGCCCTTC
TTCTCGCCATTGGGGATTTGTTGCTGCTTGGTGA