Detailed information on CNT30675796


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554643Setaria viridisOryza glaberrima32.9529.8991.55142forward
CNT303048Setaria viridisZea mays45.4845.5885.2196forward
CNT30367015Setaria viridisSorghum bicolor48.4937.2594.26209forward
CNT30371090Setaria viridisOryza glumipatula22.9720.5491.9299forward

Expression of CNT30675796

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MRLPKVLIMRESNWLISAWKAKVSVSEAMARRYFRTRGEGSGAWEEATRV*

Sequence

>CNT30675796
CATAGCATCTAGCCCCACGCATTGCAGGCTAGGAAAAGTACCACACAAAACACACCGACAACTCAACTTTCAGGGATAACCAGAACAGCTAAGCTAACTC
AGACTCAAAAGTTGCACCCGGGCGCGCTTAGTCGACCTCCTCCATCTTGCTCTCACCAGCGTCGTCCTCCAGAGGGGGCATGTCGGTGTCAGCCTCCGGG
GTCTCGTCCTCGTCGATGCTCAGGCCCAGCTTGAGCATGCGGTGAATGCGGCTGCCGAAGGTGTTGATTATGAGGGAGAGCAACTGGTTGATCTCCGCCT
GGAAGGCGAAGGTCTCTGTCTCGGAGGCCATGGCGAGACGTTACTTCCGAACGCGAGGAGAGGGCAGCGGTGCTTGGGAGGAGGCGACGAGGGTTTGAGG
GGAACCGCGGAAGCGTGGGATGGGACGAGAT