Detailed information on CNT30675788


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 1e-68

BLAST vs NONCODE:
NONBNAT003938, E-value = 2e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701953Setaria viridisQuercus lobata19.1529.3585.1981forward
CNT30377298Setaria viridisArabidopsis thaliana17.7330.1290.6775forward
CNT30468549Setaria viridisSaccharum spontaneum21.9940.4397.8593forward
CNT30107294Setaria viridisOryza longistaminata21.9934.1996.7793forward

Expression of CNT30675788

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MNSFVPDRAMVPRLFTRSDLVIPIPLSMIVRVLEELEMSSRRKISLLE*

>peptide 2 (31 aa)
PQELSDLGPVLGVLVDAKLEVSRVTVKEPPA*

Sequence

>CNT30675788
ACCTCAGGAGCTCAGCGATCTTGGTCCTGTTCTGGGAGTCCTCGTGGATGCCAAGCTTGAGGTATCACGTGTGACGGTGAAGGAGCCACCAGCCTGAGAC
TCCCACACGTACTGCTCATCATCGTTGTGCTTGGTGGTCACAACAACTCTCTCAGCAACAAGGTAGGCAGAGTAGAAACCAACTCCAAACTGACCGATCA
TAGACACATCAGCACCAGCAGCCAGAGCCTCCATGAACTCCTTTGTTCCTGACCGTGCAATGGTACCAAGGTTGTTCACGAGATCTGACTTGGTCATACC
AATACCACTGTCAATGATTGTCAGAGTGTTGGAGGAGTTGGAGATGAGCTCCCGGAGGAAGATCTCCTTGTTGGAGTAGAAGGTGTTGATGATGAGGGAG
AGCAGCTGGTTGATCTCCGCCTG