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Detailed information on CNT30675682


BLAST search results

BLAST vs Swiss-Prot:
sp|P49120|H2B4_MAIZE, E-value = 1e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Setaria viridisOryza sativa48.3434.695.89219forward
CNT30518188Setaria viridisJuglans regia43.7122.4786.36198forward
CNT30618877Setaria viridisSesamum indicum43.7125.1685.86198forward
CNT30179138Setaria viridisSecale cereale51.8829.1293.19235forward
CNT30301510Setaria viridisTriticum aestivum52.3246.9393.67237forward
CNT30220727Setaria viridisHordeum vulgare47.2427.4493.93214forward
CNT30396055Setaria viridisTriticum turgidum51.8828.7692.77235forward
CNT30565715Setaria viridisActinidia chinensis46.1426.6287.56209forward
CNT30586986Setaria viridisMusa acuminata41.7253.3988.89189forward
CNT3086649Setaria viridisVigna radiata43.0526.1482.05195forward
CNT30552027Setaria viridisOryza glaberrima48.1240.4594.04218forward
CNT30245301Setaria viridisAvena sativa50.7723.5794.78230forward
CNT30597299Setaria viridisFraxinus excelsior43.7136.0782.32198forward
CNT30129800Setaria viridisCorymbia citriodora43.7124.687.88198forward
CNT30346527Setaria viridisEragrostis tef39.0783.8996.05177forward
CNT30369169Setaria viridisOryza glumipatula45.736.1394.69207forward
CNT30327286Setaria viridisAsparagus officinalis45.4722.7988.83206forward

Expression of CNT30675682

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MVGFLLYRASLAASAASFSKMSLMKEFMMDMALEEMPMSGWTCLSTLKM*

>peptide 2 (61 aa)
RNCIGELLRNNTPDSRKHTRTLLTLIRRPSTGDTGKQGNYRRCNNHPTTGVNQPREDNRIA*

Sequence

>CNT30675682
CAGAAATTGCATTGGTGAACTACTCAGGAACAATACACCAGATTCACGAAAGCACACGCGCACACTTCTTACATTAATCAGGCGACCAAGTACTGGAGAT
ACAGGAAAGCAGGGCAACTACCGCCGCTGCAACAACCATCCTACTACAGGGGTGAACCAACCACGAGAAGACAACCGCATCGCCTAAGAGCTGGCGGACC
GAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTACCGCGCGAGCTTGGCCGCCTCCGCCGCCAGCTTCTCGAAGATGTCGTTGATGAAGG
AGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACGCTCTTCTT
CGCCTTCTTCTTGCCCTTCTTCTCGCCATTGGGGATTTGTTGCTGCTTGGTGA