Detailed information on CNT30675638


BLAST search results

BLAST vs Swiss-Prot:
sp|P32112|SAHH_WHEAT, E-value = 8e-98

BLAST vs NONCODE:
NONBRAT004190, E-value = 8e-73

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376211Setaria viridisArabidopsis thaliana72.8749.7987.22360forward
CNT30619260Setaria viridisSesamum indicum72.2733.5286.83357forward
CNT3020603Setaria viridisCitrullus lanatus71.8622.9382.82355forward
CNT3072357Setaria viridisQuercus suber53.6425.887.55265forward
CNT30380227Setaria viridisManihot esculenta27.1332.1390.3134forward
CNT30402445Setaria viridisBeta vulgaris32.1935.8191.19159forward
CNT30200315Setaria viridisPisum sativum20.8519.9689.32103forward
CNT30709695Setaria viridisGlycine max31.7847.0192.99157forward
CNT30543653Setaria viridisBrassica napus69.845084.64345forward
CNT3076654Setaria viridisBrassica juncea20.6521.8494.12102forward
CNT30261371Setaria viridisBrassica rapa65.5977.5184.88324forward
CNT30612558Setaria viridisArabis alpina61.5480.6484.87304forward
CNT30607325Setaria viridisGossypium raimondii28.7411.0190.14142forward
CNT30231757Setaria viridisAnanas comosus21.8641.0688.89108forward
CNT30365203Setaria viridisSorghum bicolor21.2648.8493.33105forward
CNT30358660Setaria viridisLactuca sativa41.537.0783.41205forward
CNT3021984Setaria viridisPopulus trichocarpa92.1121.2785.93455forward
CNT30329805Setaria viridisDioscorea rotundata60.3250.7787.58298forward
CNT30103876Setaria viridisOryza rufipogon91.599.7893.58452forward
CNT30117878Setaria viridisOryza nivara91.0910093.33450forward
CNT30723539Setaria viridisLupinus angustifolius72.2728.0484.59357forward

Expression of CNT30675638

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MLQTMALFFIFLMWSTMMMSLLPVVVTKMSASETTSSKVRT*

>peptide 2 (45 aa)
WLVNEQDMTKLGWPVAHPRFIRRPSARTMMPVLVSRPCMSISLSK*

Sequence

>CNT30675638
TGGTTAGTGAATGAGCAGGACATGACAAAGCTGGGGTGGCCAGTAGCGCACCCAAGGTTCATCAGACGACCCTCAGCGAGGACAATGATGCCAGTGTTGG
TCTCAAGACCGTGCATGTCGATCTCATTGTCAAAGTGACCAATGTTGCAGACAATGGCGTTGTTCTTCATCTTCCTCATGTGGTCAACCATGATGATGTC
CTTGTTGCCGGTGGTGGTCACAAAGATGTCAGCTTCAGAGACGACATCCTCCAAGGTAAGGACCTGAAGACCCTCCATCAAGGCCTGAAGGGCACAGATG
GGGTCGATCTCAGTCACGATGACACGGGCACCAGCCTGCTTGAGGGCAGCAGCACAGCCCTTGCCAACATCACCATAACCGCAGACCACTGCGACCTTGC
CAGCGATCATAACATCGGTGGCCCTCATCAAACCATCAGGGAGGGAGTGGCGGCAACCAGGAGGGTGCCGGTCTCCTGCATCTGGTAGAGCCTC