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Detailed information on CNT30675627


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523258Setaria viridisSetaria italica21.6613.07100146forward

Expression of CNT30675627

Peptides detected in this lncRNA

>peptide 1 (58 aa)
LSLPLHPQPPLQQHYHRTVLAFDPSRSCFPACHASHDLLHLFSFIFFFFFMGSSRTAR*

>peptide 2 (68 aa)
MLPPSQNLTILAARTTGFSRAMAEAAAGHGLSNAAVVVEGDGDGGETEAEAEAEAARKQFWHRFLVCV*

>peptide 3 (86 aa)
PYLFPSTPNHRYNNIIIALFLLLIPLVAASPPAMPPMICSIFFPSSSSSSLWDPQEQHDDNTLARPVTFKFLVKKEKKEKRNKKGT*

Sequence

>CNT30675627
CCCTATCTCTTCCCCTCCACCCCCAACCACCGCTACAACAACATTATCATCGCACTGTTCTTGCTTTTGATCCCTCTCGTAGCTGCTTCCCCGCCTGCCA
TGCCTCCCATGATCTGCTCCATCTTTTTTCCTTCATCTTCTTCTTCTTCTTTATGGGATCCTCAAGAACAGCACGATGATAACACCCTCGCTCGACCGGT
CACCTTTAAATTTCTTGTAAAGAAGGAAAAGAAAGAAAAGAGAAATAAAAAGGGAACTTGAGAGGGAGATCCAACGATCGATCGATCTCTGCGGATCGGT
GTAGGCGTCCTCCGTCCGATGCTCCCTCCCTCTCAGAACCTAACGATCTTGGCCGCGCGCACGACGGGGTTCTCCCGGGCGATGGCGGAGGCCGCAGCTG
GCCACGGCTTGTCGAACGCCGCGGTGGTAGTAGAAGGGGACGGCGACGGCGGCGAGACGGAGGCCGAGGCCGAGGCGGAGGCGGCCAGGAAGCAGTTCTG
GCACAGGTTCTTGGTGTGTGTGTAGAGCCTCGCGACGGCTCGGTGTGAATCCGGCAGCGAGGCGGCGGCTCTGGGCGATCCGGCGGGGCCGCGGGGAGGG
GAGGAGAGCAGAGCACAGGAGGAGGCGGAGGCACACCGGCGGCCTGGCCTGAGCTGAGGGAGAGGAAATGGGTT