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Detailed information on CNT30675606


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 2e-70

BLAST vs NONCODE:
NONBNAT003938, E-value = 9e-58

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523385Setaria viridisSetaria italica51.845.2899.71345forward
CNT30145759Setaria viridisMedicago truncatula28.6850.480.63191forward
CNT3061941Setaria viridisArabidopsis lyrata14.1136.1588.394forward
CNT30652959Setaria viridisRosa chinensis28.2339.0985.11188forward

Expression of CNT30675606

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MNSFVPDRAMVPRLFTRSDLVIPIPLSMIVRVLEALSGTMWMNSSGWASSLLLSVKLSNLILSKA

>peptide 2 (45 aa)
MSVSASVVSSSSMLRPSLSMRWMRLPKVLGSSRLKPEVRSAEPPA*

Sequence

>CNT30675606
ACGCAGTTCGATAATCCACCATAGCATCTAGCCCCACGTATTGCAGGCTAGGAAAAGTAATGCCACACAAAATAAACTGACAACGAGGTTCAGAAATAAC
ACCAAAAGCTAAGCTAACTCAATTCAAAAGTAAACAACCGCGCCGCTTAGTCGACCTCCTCCATCTTGCTCTCGCCGGCATCATCCTCCAGAGGGGGCAT
GTCGGTCTCAGCCTCAGTGGTCTCATCCTCGTCAATGCTCAGGCCAAGCTTGAGCATGCGGTGGATGCGGCTGCCAAAGGTGTTGGGCTCGTCAAGGCTG
AAGCCGGAAGTGAGGAGCGCAGAGCCACCAGCCTGAGACTCCCACACGTACTGCTCATCATCGTTGTGCTTGGTGGTCACAACAACTCTCTCAGCAACAA
GGTAGGCAGAGTAGAAACCAACTCCAAACTGACCGATCATAGACACATCAGCACCAGCAGCCAGAGCCTCCATGAACTCCTTTGTTCCTGACCGTGCAAT
GGTACCAAGGTTGTTCACGAGATCTGACTTGGTCATACCAATACCACTGTCAATGATTGTCAGAGTGTTGGAGGCCTTGTCAGGAACAATGTGGATGAAC
AGCTCTGGCTGGGCATCGAGCTTGCTCTTGTCCGTCAAGCTCTCAAACCTGATCTTGTCCAAGGCC