Detailed information on CNT30675560


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30584416Setaria viridisEchinochloa crusgalli48.5346.9286.36198forward
CNT30117377Setaria viridisOryza nivara14.9529.996.7261forward

Expression of CNT30675560

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MYVLLSPSAHQIGDHSPSTQPEKVWMMVLCHGSDRCCSRLSKGPLPVTWEWQRNGEEEHVRFSRQEQPRFV

>peptide 2 (62 aa)
MYIPITPQYSLSSPCIQHYYNTVLNLLSGLNTHHKLMIHTERNSHRSRFNVCPPVPISPPNW*

>peptide 3 (38 aa)
ILIKQSLPLTTLVINVHTNHPSVLTLLTMHTALLQHSP*

Sequence

>CNT30675560
AGATACTGATCAAACAATCTCTACCCTTAACCACCCTTGTCATTAATGTACATACCAATCACCCCTCAGTACTCACTCTCCTCACCATGCATACAGCATT
ATTACAACACAGTCCTTAATCTCCTCTCCGGATTAAACACACATCACAAACTGATGATCCACACAGAAAGGAATTCACATCGATCGCGTTTCAATGTATG
TCCTCCTGTCCCCATCAGCCCACCAAATTGGTGATCACTCCCCGTCGACTCAACCGGAGAAAGTCTGGATGATGGTGTTGTGCCATGGGTCGGACAGGTG
CTGCAGCAGGTTGTCGAAGGGCCCCTTGCCGGTGACATGGGAGTGGCAGAGGAATGGAGAGGAAGAGCACGTTCGTTTTAGCCGGCAGGAGCAGCCAAGG
TTTGTATT