Detailed information on CNT30675545


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513114Setaria viridisJuglans regia20.6132.8785.2695forward

Expression of CNT30675545

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MYIPITPQYSLSSPCIQHYYNTVLNLLSGLNTHHKLMIHTERNSHRSRFNVCPPVPISPPNWCCSRL*

>peptide 2 (77 aa)
MSSCPHQPTKLVLQQAVALEDGVLVDAAGVLDVLPPPDLDVVEEDELDDEQRRRPERRRRAQGRDRGAGGDGRHASR*

>peptide 3 (47 aa)
MNSMTNSADDLSDADGRRAATGVRAVTDAMLRGEMGVAEEWRGRARSF

>peptide 4 (34 aa)
QSLPLTTLVINVHTNHPSVLTLLTMHTALLQHSP*

Sequence

>CNT30675545
CAATCTCTACCCTTAACCACCCTTGTCATTAATGTACATACCAATCACCCCTCAGTACTCACTCTCCTCACCATGCATACAGCATTATTACAACACAGTC
CTTAATCTCCTCTCCGGATTAAACACACATCACAAACTGATGATCCACACAGAAAGGAATTCACATCGATCGCGTTTCAATGTATGTCCTCCTGTCCCCA
TCAGCCCACCAAATTGGTGCTGCAGCAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCTGCCGGGGTTCTTGATGTCCTGCCACCGCCGGATCTC
GACGTAGTGGAAGAGGATGAACTCGATGACGAACAGCGCCGACGACCTGAGCGACGCCGACGGGCGCAGGGCCGCGACCGGGGTGCGGGCGGTGACGGAC
GCCATGCTTCGCGGTGAGATGGGAGTGGCAGAGGAATGGAGAGGAAGAGCACGTTCGTTTT