Detailed information on CNT30675402


BLAST search results

BLAST vs Swiss-Prot:
sp|P12653|GSTF1_MAIZE, E-value = 6e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30472257Setaria viridisSaccharum spontaneum20.3619.1887.580forward
CNT30369272Setaria viridisOryza glumipatula23.6614.7293.5593forward

Expression of CNT30675402

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAHHSSTKPETSKQRGRTQIIFHAPPALGEPLQAYGFIRAATF*

>peptide 2 (62 aa)
IIIAFPRQEHRNAHFSTIQDQITRILAQSMKIQHRWHIIAAQNPKQANSEAELRLFSTHHLH*

>peptide 3 (34 aa)
YYHCVPKTRAQECSFQYNSRPDHKNPSTEHENST*

Sequence

>CNT30675402
TATTATCATTGCGTTCCCAAGACAAGAGCACAGGAATGCTCATTTCAGTACAATTCAAGACCAGATCACAAGAATCCTAGCACAGAGCATGAAAATTCAA
CATAGATGGCACATCATAGCAGCACAAAACCCGAAACAAGCAAACAGCGAGGCAGAACTCAGATTATTTTCCACGCACCACCTGCACTAGGAGAACCACT
TCAAGCTTATGGCTTCATCAGAGCCGCAACCTTCTGAACAGATGGCCTCTCCATCAGGCTGAGGAAGTCTCCAGCCAGGTACTTGTACTTGGTCAGGCGC
GCCTCGTACACCTCCAGCACCTTCTTCAGCTTCTCAAGGTTGTCCTCCACAACCTTCTGGTCAGTGGTTTGTTTTTACGGGCTGCATACTTGC