Detailed information on CNT30675387


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524663Setaria viridisSetaria italica101.2370.6293.43411forward
CNT30220801Setaria viridisHordeum vulgare70.9474.2395.14288forward
CNT30511593Setaria viridisSolanum lycopersicum33.7421.0484.67137forward
CNT30208971Setaria viridisHelianthus annuus72.1771.8182.59293forward
CNT30720843Setaria viridisTriticum spelta52.9610094.42215forward
CNT30363261Setaria viridisSorghum bicolor70.9422.6295.83288forward
CNT30497700Setaria viridisDigitaria exilis44.5833.0995.03181reverse complement
CNT30115272Setaria viridisEutrema salsugineum33.7428.1986.13137forward

Expression of CNT30675387

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKKKSSTLFLYLSKRWKGRVLWCPFQLRIGASQLLTNI

>peptide 2 (40 aa)
THPKMSALSSDFSRAAGSTAETATGSPPIRGWRDRSMEIG*

Sequence

>CNT30675387
AACCCACCCGAAGATGAGTGCTCTCTCCTCCGACTTCTCTAGAGCCGCCGGTAGCACAGCCGAGACAGCGACGGGTTCTCCACCCATACGGGGATGGAGG
GACAGAAGTATGGAAATAGGATAAGGTAGCGGTGAGACGAGCCGTGTAAATAGGTGTCAAGTGGAAGTGCAGTGATGTATGGAGCTTAGGCATCCTGACG
AACAAACGATGTGAACCTTGTTCCTACACAACCTGATCAAATCGATCAGGCACTTGCCATCTATCTTCATTGTTCAACTCTTTGATGAAAGATGAAAAAA
AAAAGCTCTACCCTCTTTCTTTATTTATCCAAGAGATGGAAGGGTAGAGTCCTTTGGTGTCCCTTCCAGTTAAGAATTGGGGCTTCACAATTACTAACCA
ATATTT