Detailed information on CNT30675375


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Setaria viridisOryza sativa51.0633.0388.89144forward
CNT30698329Setaria viridisQuercus lobata48.5829.0384.67137forward
CNT30125320Setaria viridisPhyscomitrium patens34.7510.0787.7698forward
CNT30591253Setaria viridisMusa acuminata44.6840.3892.06126forward
CNT30508427Setaria viridisSolanum lycopersicum29.4323.9284.3483forward
CNT30435418Setaria viridisAegilops tauschii58.5138.3797.58165forward
CNT30686633Setaria viridisTriticum urartu35.4636.198100reverse complement
CNT30719922Setaria viridisTriticum spelta59.2228.2697.6167forward
CNT30596421Setaria viridisOryza meridionalis40.4316.2498.25114forward
CNT30328607Setaria viridisAsparagus officinalis24.8212.2485.7170forward
CNT30148402Setaria viridisBrachypodium distachyon44.3325.4697.6125forward
CNT30114434Setaria viridisEutrema salsugineum24.1117.0989.7168forward

Expression of CNT30675375

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKSPTR*

>peptide 2 (34 aa)
MMPAAISTTTSTSPTTTPRPSHHGCGGRAGCPWA*

Sequence

>CNT30675375
TTTCTAAGGAACCCACCACATCTCTACACCTTCTGATTGGACAATGATGCCAGCAGCGATTAGTACTACTACTTCCACCTCCCCGACGACGACGCCTAGG
CCCTCTCACCACGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGCCC
GACGAGGTAGGCCTCTGCCGCCTCCTGCAGCGCGGCGACGGCGGAGCTCTGGAAGCGGAGGAATTGAGGATTGCTGGGTGTG