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Detailed information on CNT30675325


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 4e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3047350Setaria viridisPrunus dulcis23.4559.6584.56136forward
CNT30213619Setaria viridisHelianthus annuus17.4131.8687.13101forward
CNT30621647Setaria viridisCajanus cajan15.3438.5386.5289forward

Expression of CNT30675325

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPCSSHTTSQNLEPIWLPHWPPWMWRISLMAGSQGR*

Sequence

>CNT30675325
TCCCATATATCAAGCAGTGCAGGCGAACATGTCTTTCTGGTGATAACAGAGGATAAGCGGTAGCATGCAGCATGCTACCACGGAGGTACGTACTACATAC
TCAGCATAACATACGCGAATAACAATAACCAAACATACGCAAGCTCCAGCTTAAAGCAAACCAGGATCCCGAGGGTACAACAGGCGACAGGGGTCCAGAC
CACCTTACTCGTCCTGGATCGCCTCCTCATCCTCGTACTCACCCTCCTCATCAGCAGTGGCATCCTGGTACTGCTGGTACTCGGACACCAGGCTCGAGGT
CCATGAGCACGGCGCGCGGGACGAAGCGGCCGCATGAGGCCTCATTGTAGTAGACGTTGACGCGCTCGAGCTGGAGGTCGGAGGTGCCAACGTAGCGGCC
GGTGGGGTCGATGCCGTGCTCGTCGCACACCACCTCCCAGAACTTGGAGCCAATCTGGTTGCCGCACTGGCCGCCCTGGATGTGGAGGATCTCCCTCATG
GCTGGATCTCAAGGTAGGTAGCTGCAGGTGGGAAGGGAGCAGAGGGTGGTTAGTCGCGAGAAAACGATGGGACATTACTC