Detailed information on CNT30675279


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS3|TBB6_ORYSJ, E-value = 6e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522713Setaria viridisSetaria italica48.0894.61100351forward
CNT30562824Setaria viridisActinidia chinensis46.8561.5185.96342forward
CNT30681999Setaria viridisTriticum urartu43.2999.3792.09316forward

Expression of CNT30675279

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MVTDLTCRRGSSPLPRPRTHPPRPRSRPGTAGIPTRGRSCCSRPQWTPWTGPLAGCHTHWTSRCWGSTPRSRTSSCSGR*

>peptide 2 (53 aa)
LYKYQRGRLKFNRNLINAEHTNSISNTVPKARLHSIRKIQASTATDSGRTVVR*

>peptide 3 (44 aa)
MAEAVRARYCWEPREVSGAKPTMKKWRRGKGIRFTASFRRSEFS*

>peptide 4 (95 aa)
MATKHVRNNPSKSACHRRLQPPEPHGHRSHMSSGFISSSSSSYSPSSSAVASWYCWYSDTRSFMLLSASVDAMDRPLGGMSHTLDFTLLGIHSTK*

Sequence

>CNT30675279
CTATATAAGTATCAACGCGGAAGACTCAAATTCAACAGAAACCTCATAAACGCGGAGCATACTAACAGCATAAGTAATACAGTACCAAAAGCAAGACTCC
ATAGCATAAGGAAAATACAAGCATCAACAGCGACGGACAGTGGCAGGACGGTGGTACGCTAGCAGTAGTAACATGGCAACAAAACACGTAAGGAACAACC
CATCGAAATCTGCCTGCCATAGAAGGCTACAACCACCAGAGCCTCATGGTCACAGATCTCACATGTCGTCGGGGTTCATCTCCTCTTCCTCGTCCTCGTA
CTCACCCTCCTCGTCCGCGGTCGCGTCCTGGTACTGCTGGTATTCCGACACGAGGTCGTTCATGTTGCTCTCGGCCTCAGTGGACGCCATGGACAGGCCC
CTTGGCGGGATGTCACACACACTGGACTTCACGTTGTTGGGGATCCACTCCACGAAGTAGGACGAGTTCTTGTTCTGGACGTTGATCATCTGCTCGTCCA
CCTCCTTGGTGCTCATCTTCCCACGGAACATGGCAGAGGCAGTGAGGGCACGGTACTGCTGGGAGCCACGGGAGGTCAGTGGGGCGAAGCCGACCATGAA
GAAGTGGAGACGGGGGAAGGGGATCAGGTTCACTGCCAGCTTCCGGAGATCCGAGTTCAGCTGACCAGGGAACCTAAGGCAGCAGGTGACTCCACTCATG
GTAGCAGAGATCAAATGGTTCAAATCCCCA