Detailed information on CNT3067525


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553755Leersia perrieriOryza glaberrima87.2553.5585.79732reverse complement
CNT30596287Leersia perrieriOryza meridionalis20.0232.2591.67168reverse complement
CNT30370349Leersia perrieriOryza glumipatula87.2547.1685.52732reverse complement
CNT30101746Leersia perrieriOryza rufipogon46.9636.9686.55394reverse complement
CNT30576374Leersia perrieriOryza barthii87.2538.8185.79732forward
CNT30116844Leersia perrieriOryza nivara78.5549.5585.43659reverse complement
CNT30604109Leersia perrieriOryza punctata60.5546.2287.01508reverse complement

Expression of CNT3067525

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MGKMCCSEESEEEAAFNLMGLLVAAIIALVLMLICTPPRRRSVIIYPCC*

>peptide 2 (43 aa)
MGELTVMPQPPAVAISLKQTSQTEFQRKLKNTHLCQEALFFFF*

Sequence

>CNT3067525
CTGAGCTGTTTCCTCACCATCTTTGAAGATGAAATGAATTTAAAGGGAATGGCACCATGGGAGAACTGACAGTGATGCCCCAACCACCGGCCGTAGCAAT
CTCCTTAAAGCAAACATCACAAACAGAGTTTCAGAGGAAGCTCAAGAACACACACCTCTGCCAAGAAGCCCTCTTCTTCTTCTTCTAGCTGCCTTTTCAT
CTTTCTGCAACATACTACCTGCAACCAAGTGCTTGTTCTTGATCTTCTCTGACAGCTGACATGGGCAAGATGTGTTGCAGCGAGGAGTCTGAAGAGGAGG
CCGCCTTCAACCTCATGGGGCTTCTTGTCGCGGCGATCATCGCCTTGGTGCTGATGCTCATCTGCACGCCACCACGGCGGCGCTCGGTCATCATCTACCC
TTGCTGCTAAGGTGAAGTATCTGCAGGACTGCAAGTCTCCTGATGGGAGAAGCTCAATTGCTACTCACTCTGAAGAAATGATCAAGATGTGCAGGGTGAG
TGCTGTTGGGAGAAAGAAGAAGGCAGGCCAGGCATTGGCTCCTGATTTTTCAGTTCAATAATTGCTTAATTGTAATGAATCGTACTGTAAGTCATGTTTA
TTGTTATAATGGTCTGTTCATCTATAGCCTGAATTGATAGCTTTGGAAATATATAGATGCCTTTCAAATTTGTTAAATGGTATGATATGACTTGTTACCC
ACCCACTCTTTTTCTCTCTTGTGAGATGTTGATCTGATCATGACACAGAAACATAGTGACTGGCTTATCTTTTGAGAAGAAATGTAATTAGCAGCAAACA
CAGTTTTGTTGTTCTTCCCTTGCTGCTAAGTGGTTCTTT