Detailed information on CNT30675224


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43697|TBB5_MAIZE, E-value = 2e-116

BLAST vs NONCODE:
NONMEST001519, E-value = 3e-107

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641079Setaria viridisNymphaea colorata43.5648.7288.67362forward
CNT30516889Setaria viridisJuglans regia30.9342.4885.21257forward
CNT30728062Setaria viridisCorchorus capsularis48.2646.0483.54401forward
CNT30708222Setaria viridisGlycine max36.8275.9383.66306forward
CNT30291318Setaria viridisTriticum aestivum30.9377.1893257forward
CNT30562825Setaria viridisActinidia chinensis40.7961.4185.25339forward
CNT30553024Setaria viridisOryza glaberrima43.225.1486.63359forward
CNT30252641Setaria viridisAvena sativa56.257.4486.72467forward
CNT30261872Setaria viridisBrassica rapa59.6956.0582.46496forward
CNT30608822Setaria viridisGossypium raimondii38.8748.2184.52323forward
CNT30203517Setaria viridisHelianthus annuus61.2545.2881.73509forward
CNT30681848Setaria viridisTriticum urartu60.4156.7291.83502forward
CNT30722476Setaria viridisTriticum spelta48.8660.6985.96406forward
CNT30341625Setaria viridisEragrostis tef61.2552.2187.03509forward
CNT30369403Setaria viridisOryza glumipatula45.4957.5392.33378forward
CNT30706519Setaria viridisPrunus avium55.3555.4983.48460forward
CNT3057373Setaria viridisAmborella trichopoda30.3246.2482.54252forward
CNT3024558Setaria viridisPopulus trichocarpa60.7727.6786.34505forward
CNT30322043Setaria viridisAsparagus officinalis58.7258.385.04488forward
CNT30330123Setaria viridisDioscorea rotundata38.5131.4386.25320forward
CNT3099978Setaria viridisOryza rufipogon42.1243.2190.57350forward
CNT30575061Setaria viridisOryza barthii52.3547.8592.41435forward
CNT30117026Setaria viridisOryza nivara30.237.3593.23251forward
CNT30333708Setaria viridisCynara cardunculus45.0146.1785.83374forward

Expression of CNT30675224

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MARVSSAHHVLGIPHLLCELRDSEGTVLLGATGGQWGEADHEEVETGEGDQVHCQLPEIRVQLTREPKAAGDSTHGSRDQMVQIP

>peptide 2 (52 aa)
MATKHVRNNPSKSACHRRLQPPEPHGHRSHMSSGFISSSSSSYSPSSSAPSS*

>peptide 3 (48 aa)
MAVNCSLTLRNISWIEVELPMKVDAMDRPLGGMSHTLDFTLLGIHSTK*

>peptide 4 (53 aa)
LYKYQRGRLKFNRNLINAEHTNSISNTVPKARLHSIRKIQASTATDSGRTVVR*

>peptide 5 (54 aa)
MFLASHICCVSSGTVRARYCWEPREVSGAKPTMKKWRRGKGIRFTASFRRSEFS*

>peptide 6 (46 aa)
MVTDLTCRRGSSPLPRPRTHPPRPRLPPEHGCELLAHPPEHLLDRG*

Sequence

>CNT30675224
CTATATAAGTATCAACGCGGAAGACTCAAATTCAACAGAAACCTCATAAACGCGGAGCATACTAACAGCATAAGTAATACAGTACCAAAAGCAAGACTCC
ATAGCATAAGGAAAATACAAGCATCAACAGCGACGGACAGTGGCAGGACGGTGGTACGCTAGCAGTAGTAACATGGCAACAAAACACGTAAGGAACAACC
CATCGAAATCTGCCTGCCATAGAAGGCTACAACCACCAGAGCCTCATGGTCACAGATCTCACATGTCGTCGGGGTTCATCTCCTCTTCCTCGTCCTCGTA
CTCACCCTCCTCGTCCGCGCCTTCCTCCTGAACATGGCTGTGAACTGCTCGCTCACCCTCCGGAACATCTCCTGGATAGAGGTTGAGTTGCCAATGAAGG
TGGACGCCATGGACAGGCCCCTTGGCGGGATGTCACACACACTGGACTTCACGTTGTTGGGGATCCACTCCACGAAGTAGGACGAGTTCTTGTTCTGGAC
GTTGATCATCTGCTCGTCCACCTCCTTGGTGCTCATCTTCCCACGGAACATGGCAGAGGCAGTGAGGTAACGCCCATGGCGAGGGTCAGCAGCGCACATC
ATGTTCTTGGCATCCCACATCTGCTGTGTGAGCTCAGGGACAGTGAGGGCACGGTACTGCTGGGAGCCACGGGAGGTCAGTGGGGCGAAGCCGACCATGA
AGAAGTGGAGACGGGGGAAGGGGATCAGGTTCACTGCCAGCTTCCGGAGATCCGAGTTCAGCTGACCAGGGAACCTAAGGCAGCAGGTGACTCCACTCAT
GGTAGCAGAGATCAAATGGTTCAAATCCCCA