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Detailed information on CNT3067522


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-84

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693916Leersia perrieriOryza sativa72.9860.4285.14902forward
CNT30674319Leersia perrieriSetaria viridis66.3482.2585.85820forward
CNT30193041Leersia perrieriSecale cereale74.1147.4985.81916forward
CNT30226205Leersia perrieriHordeum vulgare74.7689.5384.96924forward
CNT30553671Leersia perrieriOryza glaberrima72.5777.1384.17897forward
CNT30262381Leersia perrieriBrassica rapa74.0357.1281.97915forward
CNT30476145Leersia perrieriSaccharum spontaneum72.7375.1785.43899forward
CNT30229606Leersia perrieriAnanas comosus74.3569.3683.46919forward
CNT30685626Leersia perrieriTriticum urartu74.0335.7686.56915forward
CNT30338865Leersia perrieriEragrostis tef73.9573.7785.56914forward
CNT30368619Leersia perrieriSorghum bicolor73.1478.3485.18904forward
CNT30110940Leersia perrieriOryza longistaminata72.9833.2684.81902forward
CNT30583334Leersia perrieriEchinochloa crusgalli55.531.9186.44686forward
CNT30116770Leersia perrieriOryza nivara72.9864.5284.81902forward
CNT30604126Leersia perrieriOryza punctata72.978.6992.01901forward

Expression of CNT3067522

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MPSLSWIFAFTLSIVSEDSTSRVMVFPVKVFTKICIPPLRRRTRWRVDSF*

>peptide 2 (48 aa)
MQGGLLLDVVICQGAAILQLLASKYEALLVRGNALLVLNLCLHVVNRV*

Sequence

>CNT3067522
ATCAACCTTCGTAAAAAAACTAAAAACATGAGTGACTAAAGAACAAATGTATCATCGAAATAAGCACAAACAGAACTGCTAACTTTATTTATTCATAACT
GCAATGAAGCTGCTGCGGCGCAATTGTTTTCCACGCACGGTTCGGGACAAGACTCACAAATGAAAACGTACACAAACTAGAACGAGCACAACTTCATCAC
ACAAAGGACACCAGGCGCAGCAGCAAACATCTGAGCAACCTGCCAATATTAGTGGCCACCACGGAGACGGAGCACCAGATGCAAGGTGGACTCCTTCTGG
ATGTTGTAATCTGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAATATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTG
CCTTCACGTTGTCAATCGTGTCTGACGACTCAACCTCTAGCGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATCCCACCCCTGAGCCTGAG
CACCAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGT
GGAATGCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATTGTGTCTGACGACTCAACCTCAAGTGTAATGGTCTTGCCTGTCAGGGTCTTGACAA
AAATCTGCATGCCTCCCCTCAGCCTAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATATTGTAATCTGCCAACGTCCGACCATCCTCAAGCTGCTTGCC
AGCGAAGATAAGACGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATTTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGAGTG
ATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATTCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCGA
GGGTGCGGCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTTGGCTTTGACATTGTCGAT
TGTATCAGAGGATTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATCTGTACATACAAAAAGGATAAAGGCCCATGAGAA
AATCAATCAAGACAGAAGTTGGGATACAGATAATCT