Detailed information on CNT30675196


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522744Setaria viridisSetaria italica41.0715.398.87177forward
CNT30681876Setaria viridisTriticum urartu36.4316.0985.35157forward
CNT30339792Setaria viridisEragrostis tef12.9925.1196.4356forward

Expression of CNT30675196

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MASSEPQPSEQMASPSARLRKSPARYLYLVRRASYTSSTFFSFSRLSSTTFWSVVPPSIGLMRHWKRMASSTEVLGALVLGGGEVDGHDL

>peptide 2 (43 aa)
MAHHSSTKPETSKQRGRTQIIFHAPPALGEPLQAYGFIRAATF*

>peptide 3 (46 aa)
TIQDQITRILAQSMKIQHRWHIIAAQNPKQANSEAELRLFSTHHLH*

Sequence

>CNT30675196
ACAATTCAAGACCAGATCACAAGAATCCTAGCACAGAGCATGAAAATTCAACATAGATGGCACATCATAGCAGCACAAAACCCGAAACAAGCAAACAGCG
AGGCAGAACTCAGATTATTTTCCACGCACCACCTGCACTAGGAGAACCACTTCAAGCTTATGGCTTCATCAGAGCCGCAACCTTCTGAACAGATGGCCTC
TCCATCAGCAAGGCTGAGGAAGTCTCCAGCCAGGTACTTGTACTTGGTCAGGCGCGCCTCGTACACCTCCAGCACCTTCTTCAGCTTCTCAAGGTTGTCC
TCCACAACCTTCTGGTCAGTGGTTCCCCCAAGCATAGGACTGATGAGGCACTGGAAGAGGATGGCGTCCAGCACAGAGGTGCTCGGGGCTCTTGTGCTCG
GCGGTGGCGAAGTTGATGGGCACGATCTCGT