Detailed information on CNT30675085


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690471Setaria viridisOryza sativa12.1620.3198.1153forward
CNT30249419Setaria viridisAvena sativa24.3110.7888.68106reverse complement
CNT30497728Setaria viridisDigitaria exilis27.0621.1588.98118forward

Expression of CNT30675085

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MHIHVRDTCLRPNPDTCVVVDRARVKPISVGPDDVALLALVELAGAGVEVLLHRGLAHHEVAGAVAVAVVAVPAGLATDLTSSEQ*

>peptide 2 (61 aa)
QRLRASTPAKYVDKVDLAHTNLQFHTYGGHAHTRTRYLPPAQSRYVRRRRSSPREADLSRT*

Sequence

>CNT30675085
ACAGAGGCTGCGTGCAAGCACGCCAGCAAAGTACGTGGATAAGGTAGACCTCGCACACACAAACTTACAATTTCATACATACGGAGGACATGCACATACA
CGTACGCGATACCTGCCTCCGGCCCAATCCAGATACGTGCGTCGTCGTCGATCGAGCCCGCGTGAAGCCGATCTCAGTCGGACCTGACGACGTAGCTCTC
CTTGCGCTCGTGGAACTCGCCGGTGCAGGTGTTGAAGTCCTCCTCCACCGTGGTCTCGCGCATCACGAAGTTGCCGGAGCCGTGGCCGTGGCCGTGGTGG
CCGTGCCGGCCGGGCTCGCCACCGACCTCACCTCCTCCGAGCAGTAGTCAACCTCCTGGTAGTGAGCCATTGGTGATGATGCTTGGGTTACTTGTTCAGT
GCCTGTATGCCTTGAAGTGCTTGTGAATTGTGTGAG