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Detailed information on CNT30675079


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30344080Setaria viridisEragrostis tef15.8533.6893.8197reverse complement

Expression of CNT30675079

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MAPPSLTYSTVTWVLPSGLSQDGVRHLVAQLVGVPLVHGLRGEQEALRRHCCCCLLG*

>peptide 2 (31 aa)
AVSVVQTRKRGRNKRGKRYRTTKLVQVKTSA*

>peptide 3 (43 aa)
GSFGSTDSKKGEKQKRKKIPDDQTSTGKDQRVILAATPNYTNH*

Sequence

>CNT30675079
GGCAGTTTCGGTAGTACAGACTCGAAAAAGGGGGAGAAACAAAAGAGGAAAAAGATACCGGACGACCAAACTAGTACAGGTAAAGACCAGCGCGTAATCC
TGGCTGCCACACCAAATTATACCAATCACTAAGCCGCCGGGCGGCGACATGGCTTTGCTGCAGCAATTGCCAAAGCCTTCTTATCTTCTTCTGCATCTTC
TTCTTCTTCTAAGGAAGCAGCCAGTCACTCACTGATCAGACACACATCCACGAGCAGGAGCAGCAGCAGCAGCAGTGCTTGCGGGTAACATCAGCAGCAA
GAGGTAGATGATAAGCACGGAGACGGACACTCTTCTTCTCTAAGCGGACGCCTTGTCGAACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCGGTGACG
GTGTGGACGCGGACGGGGACCATGGCGCCGCCCTCGTTGACGTACTCGACGGTGACCTGGGTCTTGCCGTCGGGCCTGAGCCAGGACGGCGTCCGACACC
TGGTCGCACAGCTTGTCGGGGTGCCCCTCGTTCACGGACTCCGAGGTGAACAGGAAGCTCTCCGCCGCCATTGCTGCTGCTGCCTTCTCGGGTAGATTAC
TCCACCAACCTC