CANTATAdb - search

Detailed information on CNT30675037

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30388443	Setaria viridis	Triticum turgidum	49.31	96.3	87.76	286	forward

Expression of CNT30675037

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MALSPVVTGSRLPKHKVVRAEDLPIGSMRTARGTKRPQEASL*

>peptide 2 (32 aa)
MVTDLTCRRGSSPLPRPRTHPPRPRSRPEQSQ*

>peptide 3 (36 aa)
AEHTNSISNTVPKARLHSIRKIQASTATDSGRTVVR*

>peptide 4 (52 aa)
MATKHVRNNPSKSACHRRLQPPEPHGHRSHMSSGFISSSSSSYSPSSSAVAS*

Sequence

>CNT30675037
CGCGGAGCATACTAACAGCATAAGTAATACAGTACCAAAAGCAAGACTCCATAGCATAAGGAAAATACAAGCATCAACAGCGACGGACAGTGGCAGGACG
GTGGTACGCTAGCAGTAGTAACATGGCAACAAAACACGTAAGGAACAACCCATCGAAATCTGCCTGCCATAGAAGGCTACAACCACCAGAGCCTCATGGT
CACAGATCTCACATGTCGTCGGGGTTCATCTCCTCTTCCTCGTCCTCGTACTCACCCTCCTCGTCCGCGGTCGCGTCCTGAACAGAGTCAATGAGCTCAG
CACCCTCAGTGTAATGGCCCTTAGCCCAGTTGTTACCGGCTCCAGATTGCCCAAACACAAAGTTGTCAGGGCGGAAGATCTGCCCATAGGGTCCATGAGG
ACAGCACGGGGCACAAAGCGGCCACAGGAGGCCTCGTTGTAGTAGACATTGACACGCTCCAACTGCAGGTCAGAGTTGCCTGTGTACCGCCCAGTTGGGT
CAATGCCATGCTCATCACACACCACCTCCCAGAACTTGGCACCGATCTGGTTGCCACATTGCCCACCCTGGATGTGCAAG