Detailed information on CNT30674975


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30363688Setaria viridisSorghum bicolor46.7428.4688.83179forward
CNT30497720Setaria viridisDigitaria exilis89.0355.2785.92341forward
CNT30594623Setaria viridisEragrostis curvula47.7867.2884.15183forward

Expression of CNT30674975

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRVTIKHRRVGRRKQAQGGRDMVKVSKAEEVSSQVCFYGLHTCKLHAI

>peptide 2 (43 aa)
MAHHSSTKPETSKQRGRTQIIFHAPPALGEPLQAYGFIRAATF*

>peptide 3 (49 aa)
HFSTIQDQITRILAQSMKIQHRWHIIAAQNPKQANSEAELRLFSTHHLH*

Sequence

>CNT30674975
CATTTCAGTACAATTCAAGACCAGATCACAAGAATCCTAGCACAGAGCATGAAAATTCAACATAGATGGCACATCATAGCAGCACAAAACCCGAAACAAG
CAAACAGCGAGGCAGAACTCAGATTATTTTCCACGCACCACCTGCACTAGGAGAACCACTTCAAGCTTATGGCTTCATCAGAGCCGCAACCTTCTGAACA
GATGGCCTCTCCATCAGGCTAGACCACCAGGCCTTCACATGAGGGTAACCATCAAGCACCGACGCGTGGGGCGTCGCAAACAAGCACAGGGTGGCAGAGA
CATGGTTAAGGTCAGCAAGGCTGAGGAAGTCTCCAGCCAGGTTTGTTTTTACGGGCTGCATACTTGCAAATTGCACGCGATTC