Detailed information on CNT30674888


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43697|TBB5_MAIZE, E-value = 2e-72

BLAST vs NONCODE:
NONBNAT004015, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617295Setaria viridisSesamum indicum23.0639.7685.89163forward
CNT30223001Setaria viridisHordeum vulgare39.3210093.53278forward
CNT30390564Setaria viridisTriticum turgidum35.9383.5594.88254forward
CNT3022005Setaria viridisPopulus trichocarpa49.3645.585.1349forward

Expression of CNT30674888

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MHSSAFSTNWWTERVALYGSTTVSDTFGEGKTENVSIMRSGYSSLIFEINS

>peptide 2 (43 aa)
MFLASHICCVSSGTVRARYCWEPREGLIVKNHALISILNQLVD*

>peptide 3 (84 aa)
MARVSSAHHVLGIPHLLCELRDSEGTVLLGATGGPHCQEPCTHQHSQPTGGLKEWHCMAQPRYQILSVRGKLRMSASCGQGTPP*

>peptide 4 (82 aa)
MATKHVRNNPSKSACHRRLQPPEPHGHRSHMSFMLLSASVNSISSMPSPVYQCKKAFLLNMAVNCSLTLRNISWIEVELPMK*

Sequence

>CNT30674888
ACCAAAAGCAAGACTCCATAGCATAAGGAAAATACAAGCATCAACAGCGACGGACAGTGGCAGGACGGTGGTACGCTAGCAGTAGTAACATGGCAACAAA
ACACGTAAGGAACAACCCATCGAAATCTGCCTGCCATAGAAGGCTACAACCACCAGAGCCTCATGGTCACAGATCTCACATGTCGTTCATGTTGCTCTCG
GCCTCAGTGAACTCCATCTCGTCCATGCCCTCGCCTGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATGGCTGTGAACTGCTCGCTCACCCTCCGGA
ACATCTCCTGGATAGAGGTTGAGTTGCCAATGAAGTAGGACGAGTTCTTGTTCTGGACGTTGATCATCTGCTCGTCCACCTCCTTGGTGCTCATCTTCCC
ACGGAACATGGCAGAGGCAGTGAGGTAACGCCCATGGCGAGGGTCAGCAGCGCACATCATGTTCTTGGCATCCCACATCTGCTGTGTGAGCTCAGGGACA
GTGAGGGCACGGTACTGCTGGGAGCCACGGGAGGGCCTCATTGTCAAGAACCATGCACTCATCAGCATTCTCAACCAACTGGTGGACTGAAAGAGTGGCA
TTGTATGGCTCAACCACGGTATCAGATACTTTCGGTGAGGGGAAAACTGAGAATGTCAGCATCATGCGGTCAGGGTACTCCTCCCTGATCTTTGAGATCA
ACAGCGT