Detailed information on CNT30674846


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693167Setaria viridisOryza sativa33.438.5188.89171forward
CNT30522866Setaria viridisSetaria italica45.957.8899.57235forward
CNT30222634Setaria viridisHordeum vulgare13.4821.8492.7569forward
CNT30456759Setaria viridisSaccharum spontaneum24.6126.9292.86126forward
CNT304942Setaria viridisZea mays29.6942.9492.76152forward
CNT30596071Setaria viridisOryza meridionalis24.4132.8991.2125forward
CNT30101341Setaria viridisOryza rufipogon33.438.688.89171forward
CNT30576149Setaria viridisOryza barthii33.434.988.89171forward
CNT30604008Setaria viridisOryza punctata33.45089.47171forward

Expression of CNT30674846

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MRMIYSFSSSPMMNLPVPGLMAAMKKKRTLKSTSGSISLMGTPVSMFSWARMPFPVMASPSSDAWHVREQCK*

>peptide 2 (32 aa)
MFENSVNKIVVLFVENIFENVFILFWELLIISG

Sequence

>CNT30674846
ACACAGGTCTCTTCGGTTTCATTCTTTGAAACGGAACTAAACAATATCTTACTCTAAGAGAACACTGACAGTCTGGCAGCCATTGGATATTAGCTAAGCT
CTTGTTTTTACAATACAACCCAACGCAACACCCTACCTTCAAAGGCCTCACGCGTAATACACAACAAAGCACGCACACGCACAGAGACGCACTGATCGAT
CAATCACAAACAAAACCATGCGCATGATTTACTCTTTTTCGTCGTCGCCGATGATGAACTTGCCGGTTCCGGGGTTGATGGCGGCGATGAAGAAGAAGAG
GACGTTGAAGAGCACGAGCGGCTCGATCTCGTTGATGGGCACGCCCGTCTCGATGTTCAGCTGGGCGAGGATGCCCTTCCCGGTGATGGCCTCTCCGAGC
AGCGACGCCTGGCATGTTCGAGAACAGTGTAAATAAAATCGTCGTTTTATTTGTGGAGAATATATTTGAAAATGTATTTATTTTATTCTGGGAATTGCTA
ATAATTAGTGGT