Detailed information on CNT30674836


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRA8|TBB5_WHEAT, E-value = 1e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727960Setaria viridisCorchorus capsularis36.9427.9484.29140forward
CNT30397469Setaria viridisTriticum turgidum51.1916.4387.11194forward
CNT30586725Setaria viridisMusa acuminata26.1214.3589.999forward
CNT3062349Setaria viridisArabidopsis lyrata36.1515.7381.75137forward

Expression of CNT30674836

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPCSSHTTSQNLEPIWLPHWPPWMWRISLMAGSQGR*

>peptide 2 (67 aa)
LQAVAVLSLLPHDIKHRVDKLSALSVVALGPVVPRARLAEDEVVRAEDLAVRPGADAVHGTRLEASL*

Sequence

>CNT30674836
CCTTGCAGGCAGTCGCAGTTCTCAGCCTCCTTCCTCACGACATCAAGCACAGAGTCGATAAGCTCAGCGCCCTCAGTGTAGTGGCCCTTGGCCCAGTTGT
TCCCCGCGCCAGACTGGCCGAAGACGAAGTTGTCAGGGCGGAAGATCTGGCCGTACGGCCCGGTGCGGACGCTGTCCATGGTACCAGGCTCGAGGCCTCA
TTGTAGTAGACGTTGACGCGCTCGAGCTGGAGGTCGGAGGTGCCAACGTAGCGGCCGGTGGGGTCGATGCCGTGCTCGTCGCACACCACCTCCCAGAACT
TGGAGCCAATCTGGTTGCCGCACTGGCCGCCCTGGATGTGGAGGATCTCCCTCATGGCTGGATCTCAAGGTAGGTAGCT