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Detailed information on CNT30674834


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 3e-74

BLAST vs NONCODE:
NONGMAT000778, E-value = 8e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532843Setaria viridisEucalyptus grandis27.323.9187.43175forward
CNT30547574Setaria viridisIpomoea triloba34.0161.4187.61218forward
CNT30512729Setaria viridisJuglans regia44.4627.787.02285forward
CNT30372016Setaria viridisArabidopsis thaliana15.1326.0188.6697forward
CNT30379936Setaria viridisManihot esculenta23.444.9189.33150forward
CNT30405823Setaria viridisBeta vulgaris36.8252.4482.2236forward
CNT30488117Setaria viridisOlea europaea38.5350.6185.43247forward
CNT30711584Setaria viridisGlycine max27.1524.7287.93174forward
CNT30191304Setaria viridisSecale cereale57.8828.5292.18371forward
CNT30300473Setaria viridisTriticum aestivum31.0520.5692.96199forward
CNT30224354Setaria viridisHordeum vulgare33.8541.8194.47217forward
CNT30391299Setaria viridisTriticum turgidum57.8867.4591.91371forward
CNT30561658Setaria viridisActinidia chinensis55.5430.4383.15356forward
CNT30510505Setaria viridisSolanum lycopersicum23.711490.79152forward
CNT30552635Setaria viridisOryza glaberrima50.8631.4189.26326forward
CNT30440874Setaria viridisAegilops tauschii56.0173.5791.09359forward
CNT30135610Setaria viridisLolium perenne55.5442.0890.73356forward
CNT3014085Setaria viridisZea mays28.2429.6793.92181forward
CNT30605685Setaria viridisGossypium raimondii26.9922.6489.6173forward
CNT30684236Setaria viridisTriticum urartu57.8845.1392.18371forward
CNT30722731Setaria viridisTriticum spelta28.8636.284.86185forward
CNT30345702Setaria viridisEragrostis tef28.3922.5291.76182forward
CNT30361520Setaria viridisSorghum bicolor28.8627.0595.14185forward
CNT30596122Setaria viridisOryza meridionalis38.2235.488.98245forward
CNT30359537Setaria viridisLactuca sativa43.5342.3482.08279forward
CNT30369654Setaria viridisOryza glumipatula43.8431.9390.04281forward
CNT30107537Setaria viridisOryza longistaminata26.0518.1791.62167forward
CNT30100253Setaria viridisOryza rufipogon57.4133.3989.4368forward
CNT30575129Setaria viridisOryza barthii28.3922.3692.31182forward
CNT30497701Setaria viridisDigitaria exilis30.8960.9296.97198forward
CNT30116094Setaria viridisOryza nivara50.0836.4889.1321forward
CNT30604019Setaria viridisOryza punctata19.0336.0992.62122forward

Expression of CNT30674834

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MFGPVVSGPKHQIFLARSLSQPNSSERILERTLGSSRGPMRPSSIASGRPSSKGRASM*

>peptide 2 (51 aa)
MTVRQDFSRTVSRKETTGGETIISAPPMKSVTLVSPPDLRDDMWRRRRERST

>peptide 3 (78 aa)
TSSTNHQNLELVLELRKRGHLLLETLPLADIQHQLSSLGASLQRIRAHHVPVVKHTLRERLARGCSPQPTGSQPQQNP*

Sequence

>CNT30674834
ACCAGCAGCACAAACCACCAAAATTTAGAGCTTGTCCTCGAACTCAGAAAGAGGGGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATATCCAACACC
AGCTGAGCAGCCTGGGAGCCAGCCTCCAGAGGATCAGAGCCCATCATGTCCCAGTGGTCAAACACACACTGAGGGAACGCCTGGCCAGAGGTTGCAGCCC
TCAGCCCACTGGAAGCCAGCCACAACAGAATCCTTGATTTCATTGAGGTACTGCACTCCCTTACACATATCAACAACCATGTTCGGGCCAGTGGTCTCAG
GTCCAAAGCACCAAATCTTCTTGGCAAGATCCTTGTCCCAACCAAACTCCTCAGAGAGGATCTTGGAGCGAACCTTGGGATCATCACGTGGACCAATGCG
GCCCTCATCAATAGCCTCAGGGAGACCCTCTTCCAAGGGACGGGCTTCCATGTAAAGACGGTTGTGCTTGTTGGGGGACTTGCTCATGACTGTTCGGCAG
GATTTCTCAAGAACAGTTTCACGGAAAGAGACAACAGGAGGAGAAACAATAATTTCAGCACCACCCATGAAGTCAGTCACCTTGGTTTCGCCTCCCGATC
TGAGAGACGATATGTGGAGGCGCCGCCGGGAGAGAAGCACT