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Detailed information on CNT30674820


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ARZ9|R27AA_ORYSJ, E-value = 1e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693384Setaria viridisOryza sativa32.2634.291.23171forward
CNT30523172Setaria viridisSetaria italica52.2643.76100277forward
CNT30435581Setaria viridisAegilops tauschii31.3233.1392.17166forward
CNT30246600Setaria viridisAvena sativa29.8126.1693.04158forward
CNT30142281Setaria viridisLolium perenne34.1523.5493.37181forward
CNT30369422Setaria viridisOryza glumipatula32.2613.0797.08171forward
CNT30580001Setaria viridisEchinochloa crusgalli58.1142.1993.51308forward
CNT30497500Setaria viridisDigitaria exilis57.7420.6893.14306forward

Expression of CNT30674820

Peptides detected in this lncRNA

>peptide 1 (49 aa)
KVSITIRDAGVLFQENYFNMRQKRKLSSSKTFHFPSPQHNSGAPYACWL*

>peptide 2 (45 aa)
MQEFCSKKTTLTCDKKENYHLARLSIFLLPNITAEHPTPAGCRRR*

Sequence

>CNT30674820
CAAAAGTAAGCATCACCATAAGAGATGCAGGAGTTCTGTTCCAAGAAAACTACTTTAACATGCGACAAAAAAGAAAATTATCATCTAGCAAGACTTTCCA
TTTTCCTTCTCCCCAACATAACAGCGGAGCACCCTACGCCTGCTGGTTGTAGACGTAGGTGAGGCCGCACTTACCGCAGTAGTGGCGGTCGAAGTGGTTG
GCCATGAAGGTTCCCGCGCCGCACTCGGCGTTGGGGCATTCCTTGCGGAGGCGGGTAACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGCACGG
CGAGCTTCACCTTCTTGTGCTTGTGCTTGATCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCCCCTCCCCTGAGGCGGAGCACCAGGTG
CAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGGTTCTCGCCTGCGGCGGCG
GGGTGGAGTGGTGTGGTCGACTAGGGTTTC