Detailed information on CNT30674803


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690742Setaria viridisOryza sativa22.7234.9386.32117forward
CNT30552193Setaria viridisOryza glaberrima22.7234.1185.47117forward
CNT3066768Setaria viridisLeersia perrieri20.7832.4285.98107forward
CNT30369269Setaria viridisOryza glumipatula22.7228.0685.47117forward
CNT30107444Setaria viridisOryza longistaminata20.7810.4789.72107forward
CNT3099509Setaria viridisOryza rufipogon22.7216.3286.32117forward
CNT30574818Setaria viridisOryza barthii22.7216.2386.32117forward

Expression of CNT30674803

Peptides detected in this lncRNA

>peptide 1 (31 aa)
NIHNSSSKLRGTALFTSPNLNKNACCRTTGK*

Sequence

>CNT30674803
AAATATCCATAACTCCAGCTCAAAACTAAGAGGAACAGCTTTGTTCACATCACCAAACTTAAACAAAAATGCCTGTTGCAGGACTACAGGTAAATAAGTG
CCACAGCACAAGTTCAGATCACCACATAAGATAGAACTACTACGATGGGACTACACTTCACTCGTCATCCTCATCATCGTCGTCATCAGCACCACCCGAG
GAGTTGAGGGCGTTGAGCCTTTCGACGAGGCTGGCCTTCCTCTGCTCATAGGTCAGCTTCTTGGGGTTGTACCTAAAGGAAAAATAATTGTTAGAGCTAT
GCAGTTTATGGAATTAAGGTAGGTAAAGGCATCAAGATGTAGACAACAGTTCGCTAGATTGGTGGCTGCCTTGTTATACCTCTTGTGCTCCTTTGGTGGC
TGCTTGATGTACTTGCGGTGGATCTCAGCATCCAGGTTCTTCTCATCCTTCTTGAAACCAGCAAACCTCTTGTCACTGTGAGGAATATCCAGACCACCAT
CCAAAGCACCCTACA