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Detailed information on CNT30674787


BLAST search results

BLAST vs Swiss-Prot:
sp|P18025|TBB1_MAIZE, E-value = 3e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30721065Setaria viridisTriticum spelta23.4266.0792.57148forward
CNT30364150Setaria viridisSorghum bicolor29.9149.4896.3189forward

Expression of CNT30674787

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MARVSSAHHVLGIPHLLCELRDSEGTVLLGATGAQLLPAPDCPNTKLSGRKICP*

>peptide 2 (61 aa)
MFLASHICCVSSGTVRARYCWEPREPSCYRLQIAQTQSCQGGRSAHRVQCGHCPLSQAQGP*

>peptide 3 (79 aa)
MATKHVRNNPSKSACHRRLQPPEPHGHRSHMSFMLLSASVNSISSMPSPVYQCKKAFLLNMAVNCSLTLRNISWIEAVR*

Sequence

>CNT30674787
ACCAAAAGCAAGACTCCATAGCATAAGGAAAATACAAGCATCAACAGCGACGGACAGTGGCAGGACGGTGGTACGCTAGCAGTAGTAACATGGCAACAAA
ACACGTAAGGAACAACCCATCGAAATCTGCCTGCCATAGAAGGCTACAACCACCAGAGCCTCATGGTCACAGATCTCACATGTCGTTCATGTTGCTCTCG
GCCTCAGTGAACTCCATCTCGTCCATGCCCTCGCCTGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATGGCTGTGAACTGCTCGCTCACCCTCCGGA
ACATCTCCTGGATAGAGGCAGTGAGGTAACGCCCATGGCGAGGGTCAGCAGCGCACATCATGTTCTTGGCATCCCACATCTGCTGTGTGAGCTCAGGGAC
AGTGAGGGCACGGTACTGCTGGGAGCCACGGGAGCCCAGTTGTTACCGGCTCCAGATTGCCCAAACACAAAGTTGTCAGGGCGGAAGATCTGCCCATAGG
GTCCAGTGCGGACACTGTCCATTGTCCCAGGCTCAAGGTCCATGAGGACAGCACGGGGCACAAAGCGGCCACAGGAGGCCTCGTTGTAGTAGACATTGAC
ACGCTCCAACTGCAGGTCAGAGTTGCCTGTGT