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Detailed information on CNT30674769


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 7e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693922Setaria viridisOryza sativa27.0323.8496.99133forward
CNT30500037Setaria viridisCoffea canephora26.4222.1892.31130forward
CNT30285916Setaria viridisTriticum aestivum27.0321.7797.74133forward
CNT30591107Setaria viridisMusa acuminata27.6444.4494.12136forward
CNT30553804Setaria viridisOryza glaberrima27.0322.0696.99133forward
CNT30719745Setaria viridisTriticum spelta27.4427.1697.78135forward

Expression of CNT30674769

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MKVPAPHSALGHSLRRRCWSGGMPSLSWILAFTLSMVSEDSTSSVMVFPVRVFTKICILAGAPFPAAAALT*

>peptide 2 (54 aa)
ISSKPKVSITIRDAGVLFQENYFNMRQKRKLSSSKTFHFPSPQHNSGAPYACWL*

>peptide 3 (45 aa)
MQEFCSKKTTLTCDKKENYHLARLSIFLLPNITAEHPTPAGCRRR*

Sequence

>CNT30674769
GATATCATCAAAACCAAAAGTAAGCATCACCATAAGAGATGCAGGAGTTCTGTTCCAAGAAAACTACTTTAACATGCGACAAAAAAGAAAATTATCATCT
AGCAAGACTTTCCATTTTCCTTCTCCCCAACATAACAGCGGAGCACCCTACGCCTGCTGGTTGTAGACGTAGGTGAGGCCGCACTTACCGCAGTAGTGGC
GGTCGAAGTGGTTGGCCATGAAGGTTCCCGCGCCGCACTCGGCGTTGGGGCATTCCTTGCGGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG
GATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGTGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCAGGC
GCGCCCTTCCCGGCGGCGGCCGCCCTTACCTGAGGTGGAGGAGGCGCTGGTTCTCGCCTGCGGCGGCGGGGTGGAGTGGTGTGGTCGACTAG