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Detailed information on CNT3067471


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 9e-151

BLAST vs NONCODE:
NONSTUT001005, E-value = 3e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30147672Leersia perrieriBrachypodium distachyon66.9683.4486.67675forward
CNT30604305Leersia perrieriOryza punctata68.2576.0290.84688forward

Expression of CNT3067471

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MPSLSWIFAFTLSIVSEDSTSRVMVFPVKVFTKICIPPLRRRTRWRVDSF*

>peptide 2 (48 aa)
MQGGLLLDVVICQGAAILQLLASKYEALLVRGNALLVLNLCLHVVNRV*

Sequence

>CNT3067471
ATCAACCTTCGTAAAAAAACTAAAAACATGAGTGACTAAAGAACAAATGTATCATCGAAATAAGCACAAACAGAACTGCTAACTTTATTTATTCATAACT
GCAATGAAGCTGCTGCGGCGCAATTGTTTTCCACGCACGGTTCGGGACAAGACTCACAAATGAAAACGTACACAAACTAGAACGAGCACAACTTCATCAC
ACAAAGGACACCAGGCGCAGCAGCAAACATCTGAGCAACCTGCCAATATTAGTGGCCACCACGGAGACGGAGCACCAGATGCAAGGTGGACTCCTTCTGG
ATGTTGTAATCTGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAATATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTG
CCTTCACGTTGTCAATCGTGTCTGACGACTCAACCTCTAGCGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATCCCACCCCTGAGCCTGAG
CACCAGGTGAAGAGTGGATTCCTTCTGAATATTGTAATCTGCCAACGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGG
GGAATGCCCTCCTTGTCCTGGATTTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAA
AGATCTGCATTCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGGCCGTCCTCAAGTTGCTTGCC
CGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTTGGCTTTGACATTGTCGATTGTATCAGAGGATTCAACCTCAAGGGTT
ATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATCTGTACATACAAAAAGGATAAAGGCCCATGAGAAAATCAATCAAGACAGAAGTTGGGATACA
GATAATCT