Detailed information on CNT30674637


BLAST search results

BLAST vs Swiss-Prot:
sp|P85194|PSBO_HELAN, E-value = 1e-35

BLAST vs NONCODE:
NONBRAT003826, E-value = 3e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374900Setaria viridisArabidopsis thaliana56.5621.4484125forward
CNT30727931Setaria viridisCorchorus capsularis57.9216.5282.81128forward
CNT30524993Setaria viridisPhaseolus vulgaris57.9211.1688.28128forward
CNT3042430Setaria viridisPrunus dulcis56.5611.4884125forward
CNT30567883Setaria viridisActinidia chinensis33.943.4886.6775forward
CNT30542247Setaria viridisBrassica napus59.2821.9885.5131forward
CNT30238377Setaria viridisBrassica oleracea63.3526.0784.29140forward
CNT30259787Setaria viridisBrassica rapa59.2823.9983.97131forward
CNT30597992Setaria viridisFraxinus excelsior26.716.9186.4459forward
CNT30607994Setaria viridisGossypium raimondii44.3411.2984.6998forward
CNT30713316Setaria viridisMalus domestica golden56.5613.4184.8125forward
CNT30626592Setaria viridisDaucus carota30.777.7288.2468forward
CNT30704492Setaria viridisPrunus avium56.5613.3182.4125forward
CNT30319324Setaria viridisAsparagus officinalis70.1448.5989.68155forward
CNT30725886Setaria viridisLupinus angustifolius44.344.2884.6998forward

Expression of CNT30674637

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSLVFWNSGGAFLAMPSALTVKDVGSRQNFFIW

>peptide 2 (72 aa)
TRSNHHGPWVDAVLLLELEGAVGADLERALDLVEGVGEAGHELGLLELGRGVLGDALGLDGEGRRLQAELLHL

>peptide 3 (35 aa)
PGRTTTALGSMPSFSSNLRVPSEPTSSGPSISSRV*

Sequence

>CNT30674637
ACCCGGTCGAACCACCACGGCCCTTGGGTCGATGCCGTCCTTCTCCTCGAACTTGAGGGTGCCGTCGGAGCCGACCTCGAGCGGGCCCTCGATCTCGTCG
AGGGTGTAGGTGAGGCGGGTCATGAGCTTGGTCTTCTGGAACTCGGGCGGGGCGTTCTTGGCGATGCCCTCGGCCTTGACGGTGAAGGACGTCGGCTCCA
GGCAGAACTTCTTCATCTGGT