Detailed information on CNT30674634


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT002096, E-value = 2e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Setaria viridisOryza sativa40.5551.3190.14294forward
CNT30377201Setaria viridisArabidopsis thaliana44.4156.2987.89322forward
CNT30728063Setaria viridisCorchorus capsularis44.6937.3386.11324forward
CNT30381383Setaria viridisManihot esculenta42.0717.3684.92305forward
CNT30196370Setaria viridisPisum sativum44.693484.57324forward
CNT30567082Setaria viridisActinidia chinensis4472.586.52319forward
CNT30614070Setaria viridisArabis alpina44.4123.388.2322forward
CNT30627268Setaria viridisDaucus carota40.4123.6783.28293forward
CNT30370114Setaria viridisOryza glumipatula44.6939.5689.81324forward
CNT30433292Setaria viridisPapaver somniferum42.0729.181.97305forward
CNT3021874Setaria viridisPopulus trichocarpa42.955.9486.5311forward
CNT30119164Setaria viridisCitrus clementina35.0354.5183.86254forward
CNT30575530Setaria viridisOryza barthii44.8335.9989.85325forward

Expression of CNT30674634

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MQESLPPEHSSELLTHTAEHLLDGGGVSDEGGGHGEATWRDVTDAGLDVVGDPLHEVGRVLVLDIDHLLVHLLGAHLATEHGRGREVPT*

>peptide 2 (75 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRRNISWMEVEFPMKVEAMERPRGGMSQTLDLTLLGIHSTK*

>peptide 3 (60 aa)
MAEAVRCQRSGRWGRCRARRTPPPRTWSQSGCRTGRPGCGGSPSWLDLKVGSCRSEWAVG*

>peptide 4 (36 aa)
MPCSSHTTSQNLEPIWLPHWPPWMWRISLMAGSQGR*

Sequence

>CNT30674634
AATAATCCAATACTCCTCCCATATATCAAGCAGTGCAGGCGAACATGTCTTTCTGGTGATAACAGAGGATAAGCGGTAGCATGCAGCATGCTACCACGGA
GGTACGTACTACATACTCAGCATAACATACGCGAATAACAATAACCAAACATACGCAAGCTCCAGCTTAAAGCAAACCAGGATCCCGAGGGTCGTTCATG
TTGCTCTCTGCCTCAGTGAACTCCATCTCGTCCATGCCCTCACCAGTGTACCAATGCAAGAAAGCCTTCCTCCTGAACATAGCAGTGAACTGCTCACTCA
CACGGCGGAACATCTCCTGGATGGAGGTGGAGTTTCCGATGAAGGTGGAGGCCATGGAGAGGCCACGTGGCGGGATGTCACAGACGCTGGACTTGACGTT
GTTGGGGATCCACTCCACGAAGTAGGAAGAGTTCTTGTTCTGGACATTGATCATCTGCTCGTCCACCTCCTTGGTGCTCATCTTGCCACGGAACATGGCA
GAGGCCGTGAGGTGCCAACGTAGCGGCCGGTGGGGTCGATGCCGTGCTCGTCGCACACCACCTCCCAGAACTTGGAGCCAATCTGGTTGCCGCACTGGCC
GCCCTGGATGTGGAGGATCTCCCTCATGGCTGGATCTCAAGGTAGGTAGCTGCAGAAGCGAGTGGGCCGTCGGTTGAGAGGGAGAGGGGCGAGAGGGGTA
TGGTAAATGGAATGGGCGAGAGGGC