Detailed information on CNT30674534


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30133314Setaria viridisLolium perenne25.7818.7584.4141forward
CNT30678882Setaria viridisTriticum urartu25.9626.7986.62142forward
CNT30595599Setaria viridisOryza meridionalis22.1230.1781.82121forward

Expression of CNT30674534

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MCGYESKSDACGVAVMMWKVNGKWLRSAKLKKFPARRGRTGEGQQRAC*

>peptide 2 (67 aa)
MSWLDLHMGADLLQRRPRHNSRPPRLDVRVRVEERRVRRRRHDVEGEREVVEVREAEEVPGEERPHR*

>peptide 3 (54 aa)
SSRTVIKKQIRTAHSPAIMQPQHYWKGYERSEHATLLHIQIMSHVVGLSDHVMA*

Sequence

>CNT30674534
ACAGTAGTAGGACAGTAATAAAAAAGCAAATACGCACAGCACACAGTCCTGCAATAATGCAGCCACAACATTATTGGAAAGGATATGAACGAAGCGAGCA
CGCTACATTACTACATATCCAAATCATGTCCCATGTCGTCGGCTTGAGCGATCATGTCATGGCTTGATCTCCATATGGGTGCTGATCTTCTTCAGCGACG
GCCTCGCCATAACTCTCGCCCACCACGCCTTGATGTGCGGGTACGAGTCGAAGAGCGACGCGTGCGGCGTCGCCGTCATGATGTGGAAGGTGAACGGGAA
GTGGTTGAGGTCCGCGAAGCTGAAGAAGTTCCCGGCGAGGAGAGGCCGCACCGGTGAAGGCCAGCAGCGCGCGTGCTAGATCTGCACAGCTTGTCGCGGT
TGCTTAAAGCCTGTGCACAGATGATGGTGCCTGGGGTCTTGTCATATGTCAATGGACCAGGAAGGAGGCCATGACAGCAGATGGCCCGGACTACCGGAAG
GTCCATGAACCATGGTGACTTGATGAGTGTGACAGTGCTAGCGTGGT