CANTATAdb - search

Detailed information on CNT30674516

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30618114	Setaria viridis	Sesamum indicum	22.2	30.31	86.13	137	forward
CNT30441436	Setaria viridis	Aegilops tauschii	34.2	41.62	90.52	211	forward

Expression of CNT30674516

Peptides detected in this lncRNA

>peptide 1 (38 aa)
TDSKKGEKQKRKKIPDDQTSTGKDQRVILAATPNYTNH*

>peptide 2 (79 aa)
MMILRPVRPASPCGPPMTKRPEGLRWKMVFSSRYFSGMMGLMTCSLRSAAISSLVTVSSCWVEMRTVWTRTGTMAPPSLT

Sequence

>CNT30674516
ACAGACTCGAAAAAGGGGGAGAAACAAAAGAGGAAAAAGATACCGGACGACCAAACTAGTACAGGTAAAGACCAGCGCGTAATCCTGGCTGCCACACCAA
ATTATACCAATCACTAAGCCGCCGGGCGGCGACATGGCTTTGCTGCAGCAATTGCCAAAGCCTTCTTATCTTCTTCTGCATCTTCTTCTTCTTCTAAGGA
AGCAGCCAGTCACTCACTGATCAGACACACATCCACGAGCAGGAGCAGCAGCAGCAGCAGTGCTTGCGGGTAACATCAGCAGCAAGAGGTAGATGATAAG
CACGGAGACGGACACTCTTCTTCTCTAAGCGGACGCCTTGTCGAACTTGAGGGGCTTCACCACCTCCCAGGTGTCGATGATGATCTTGCGGCCGGTGAGG
CCGGCGTCGCCGTGCGGCCCGCCGATGACGAAGCGGCCCGAAGGGTTGAGGTGGAAGATGGTCTTCTCGTCGAGGTACTTCTCCGGGATGATGGGCTTGA
TGACGTGCTCCTTGAGGTCGGCGGCGATCTCGTCGTTGGTGACGGTCTCGTCGTGCTGGGTGGAGATGAGGACGGTGTGGACGCGGACGGGGACCATGGC
GCCGCCCTCGTTGACGT