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Detailed information on CNT30674495


BLAST search results

BLAST vs Swiss-Prot:
sp|P49120|H2B4_MAIZE, E-value = 6e-24

BLAST vs NONCODE:
NONORUT000045, E-value = 2e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693801Setaria viridisOryza sativa26.1235.4897.9899forward
CNT30523132Setaria viridisSetaria italica10063.48100379forward
CNT30178569Setaria viridisSecale cereale43.2725.3596.34164forward
CNT30226219Setaria viridisHordeum vulgare25.8641.8898.9898forward
CNT3013020Setaria viridisZea mays30.0851.8298.25114forward
CNT30363844Setaria viridisSorghum bicolor96.8346.2292.37367forward
CNT30108786Setaria viridisOryza longistaminata74.678.3690.11283forward

Expression of CNT30674495

Peptides detected in this lncRNA

>peptide 1 (32 aa)
KFHQLLLLPLALPDKLSHIYQHHRATTSTNLR*

Sequence

>CNT30674495
AAGTTTCACCAACTACTACTACTACCACTAGCCCTACCGGATAAACTGAGCCACATCTACCAACACCACCGAGCTACTACTAGCACCAACCTAAGATGAG
GTGAACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGAGA
TGCCGATGTCGGGGTGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACCGACTTCTTCGCCTTCTTCTTCCCCTTCTTGCCCTCGCC
GCCCTCCTTGCCGGCGGACTTGCCCGCGGGGAGACGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGGGCCTTCTCCGCC