Detailed information on CNT3067447


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678235Leersia perrieriSetaria viridis48.590.7382.48274forward
CNT30522059Leersia perrieriSetaria italica48.556.3882.12274forward
CNT30224680Leersia perrieriHordeum vulgare60.7150.8183.09343forward
CNT30553869Leersia perrieriOryza glaberrima76.2881.0291.65431forward
CNT30448340Leersia perrieriSaccharum spontaneum51.8653.4782.94293forward
CNT30596300Leersia perrieriOryza meridionalis76.2823.8591.42431forward
CNT30105837Leersia perrieriOryza longistaminata76.2867.4591.65431forward
CNT30101734Leersia perrieriOryza rufipogon76.2843.1491.65431forward
CNT30575480Leersia perrieriOryza barthii48.550.5590.51274forward
CNT30604101Leersia perrieriOryza punctata47.0885.8188.72266forward

Expression of CNT3067447

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTQLSPLKYTRRGNAHPLSKVKVMESFRRRSSDCAFPSGPACMSKSL*

>peptide 2 (82 aa)
SFHFTASFSSSHGYLYHAMGSICSLLISEGCRIQSSSTGEVVTRQNMVPFEAGQDISMFEDVQEEFDPRQSIECTAWNLTTT*

Sequence

>CNT3067447
TCCTTCCATTTTACTGCATCTTTCAGCTCTTCTCACGGGTATTTATATCATGCCATGGGCAGCATTTGCTCTCTGCTGATCTCTGAAGGTTGCAGAATTC
AGAGCAGCAGCACCGGGGAGGTTGTCACACGACAAAACATGGTTCCGTTTGAAGCAGGCCAAGACATTAGCATGTTTGAGGATGTACAAGAGGAGTTTGA
TCCACGGCAATCTATAGAGTGCACAGCATGGAACCTGACAACAACTTGAAGCTCACTGAATTTCTTTGGTTTCACTCATCATGCATAAGCCAGCAAAGTA
GCCAACACAATTGAAAATACCAAAAGTGAGAGCGTCAATGGTTGTTTTCTCATAGGACTTGCATTAGGCAACCATGGATATGCATCTGGAGGTGGCATGA
CACAGTTATCACCATTGAAGTACACACGGCGTGGAAACGCCCATCCCTTGTCAAAGGTGAAGGTCATGGAATCCTTCCGCAGAAGAAGTTCTGACTGTGC
ATTTCCAAGTGGACCAGCTTGCATGAGCAAATCATTATAGAACTTAACTCCCCAGAACATCGCCG