Detailed information on CNT30674447


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ARZ9|R27AA_ORYSJ, E-value = 5e-83

BLAST vs NONCODE:
NONSTUT000620, E-value = 1e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530180Setaria viridisEucalyptus grandis25.8332.6493.6172forward
CNT30316655Setaria viridisCorylus avellana26.1355.2493.1174forward
CNT30628786Setaria viridisVigna unguiculata27.7837.7691.35185forward
CNT30178120Setaria viridisSecale cereale27.7820.6995.68185forward
CNT30285265Setaria viridisTriticum aestivum27.7824.696.22185forward
CNT30220581Setaria viridisHordeum vulgare27.7824.9395.68185forward
CNT30456592Setaria viridisSaccharum spontaneum28.9823.4896.37193forward
CNT30720017Setaria viridisTriticum spelta27.7822.496.22185forward
CNT30338860Setaria viridisEragrostis tef27.7822.5196.76185forward
CNT30368046Setaria viridisSorghum bicolor27.7830.3395.14185forward

Expression of CNT30674447

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MQEFCSKKTTLTCDKKENYHLARLSIFLLPNITAEHPTPAGCRRR*

>peptide 2 (49 aa)
KVSITIRDAGVLFQENYFNMRQKRKLSSSKTFHFPSPQHNSGAPYACWL*

>peptide 3 (64 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSSVMARPSRRRPPLPEVEEALVLACGGGVEWCGRLGF

Sequence

>CNT30674447
CAAAAGTAAGCATCACCATAAGAGATGCAGGAGTTCTGTTCCAAGAAAACTACTTTAACATGCGACAAAAAAGAAAATTATCATCTAGCAAGACTTTCCA
TTTTCCTTCTCCCCAACATAACAGCGGAGCACCCTACGCCTGCTGGTTGTAGACGTAGGTGAGGCCGCACTTACCGCAGTAGTGGCGGTCGAAGTGGTTG
GCCATGAAGGTTCCCGCGCCGCACTCGGCGTTGGGGCATTCCTTGCGGAGGCGGGTAACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGCACGG
CGAGCTTCACCTTCTTGTGCTTGTGCTTGATCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCCCCTCCCCTGAGGCGGAGCACCAGGTG
CAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCC
TCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGTGTGATGGCGCGCCCTTCCCGGCGGCGGCCGCCCTTACCTG
AGGTGGAGGAGGCGCTGGTTCTCGCCTGCGGCGGCGGGGTGGAGTGGTGTGGTCGACTAGGGTTTC