Detailed information on CNT30674439


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZP9|CP122_ARATH, E-value = 5e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30729972Setaria viridisCorchorus capsularis49.3620.1484.48116forward
CNT30710175Setaria viridisGlycine max50.6430.0583.19119forward
CNT30290105Setaria viridisTriticum aestivum50.2125.9992.37118forward
CNT30387749Setaria viridisTriticum turgidum54.8920.2592.25129forward
CNT30586289Setaria viridisMusa acuminata44.6836.9790.48105forward
CNT30246208Setaria viridisAvena sativa54.8922.7591.47129forward
CNT30659185Setaria viridisTriticum dicoccoides54.8924.292.25129forward
CNT30260752Setaria viridisBrassica rapa20.4310.2691.6748forward
CNT30134237Setaria viridisLolium perenne54.8920.5191.47129forward
CNT3015512Setaria viridisZea mays56.615.4787.22133forward
CNT30620908Setaria viridisCajanus cajan52.7717.4683.87124forward
CNT30369330Setaria viridisOryza glumipatula31.9113.3989.3375forward
CNT30580598Setaria viridisEchinochloa crusgalli71.9131.7789.94169forward
CNT30497736Setaria viridisDigitaria exilis54.8918.5992.25129forward
CNT30557621Setaria viridisPanicum hallii51.9122.2295.08122forward

Expression of CNT30674439

Peptides detected in this lncRNA

>peptide 1 (59 aa)
SVVVGAALVGLRVLLAVLLERVVVLLELVPGVARRGAELLHLVAVVERLATVDAIFAAS*

Sequence

>CNT30674439
TCAGTTGTCGTAGGTGCGGCACTCGTCGGTCTCCGGGTTCTCCTTGCAGTACTTCTCGAGCGGGTCGTTGTCCTCCTTGAGCTTGTCCCGGGCGTGGCTC
GCCGCGGCGCTGAGCTCCTCCACCTCGTCGCCGTGGTAGAAAGGCTCGCCACCGTCGACGCCATCTTTGCAGCTAGCTAGCTGTGTGTCGCGAAGTTTTT
TCTGTGATTTGTTGTGGCTTTACTTGAAGAACTGT